RT Journal Article SR Electronic T1 A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells JF bioRxiv FD Cold Spring Harbor Laboratory SP 809418 DO 10.1101/809418 A1 José M. Dias A1 Zhanna Alekseenko A1 Ashwini Jeggari A1 Marcelo Boareto A1 Jannik Vollmer A1 Mariya Kozhevnikova A1 Hui Wang A1 Michael P. Matise A1 Andrey Alexeyenko A1 Dagmar Iber A1 Johan Ericson YR 2019 UL http://biorxiv.org/content/early/2019/10/17/809418.abstract AB How time is measured by neural stem cells during temporal neurogenesis has remained unresolved. By combining experiments and computational modelling, we here define a Shh/Gli-driven three-node timer underlying the sequential generation of motor neurons (MNs) and serotonergic neurons in the brainstem. The timer is founded on temporal decline of Gli-activator and Gli-repressor activities established through downregulation of Gli transcription. The circuitry conforms an incoherent feedforward loop, whereby Gli proteins promote expression of Phox2b and thereby MN-fate, but also account for a delayed activation of a self-promoting Tgfβ-node triggering a fate switch by repressing Phox2b. Hysteresis and spatial averaging by diffusion of Tgfβ counteracts noise and increases temporal accuracy at the population level. Our study defines how time is reliably encoded during the sequential specification of neurons.