PT  - JOURNAL ARTICLE
AU  - Carles B. Adsera
AU  - Yongjin P. Park
AU  - Wouter Meuleman
AU  - Manolis Kellis
TI  - Integrative analysis of 10,000 epigenomic maps across 800 samples for regulatory genomics and disease dissection
AID  - 10.1101/810291
DP  - 2019 Jan 01
TA  - bioRxiv
PG  - 810291
4099  - http://biorxiv.org/content/early/2019/10/19/810291.short
4100  - http://biorxiv.org/content/early/2019/10/19/810291.full
AB  - To help elucidate genetic variants underlying complex traits, we develop EpiMap, a compendium of 833 reference epigenomes across 18 uniformly-processed and computationally-completed assays. We define chromatin states, high-resolution enhancers, activity patterns, enhancer modules, upstream regulators, and downstream target gene functions. We annotate 30,247 genetic variants associated with 534 traits, recognize principal and partner tissues underlying each trait, infer trait-tissue, tissue-tissue and trait-trait relationships, and partition multifactorial traits into their tissue-specific contributing factors. Our results demonstrate the importance of dense, rich, and high-resolution epigenomic annotations for complex trait dissection, and yield numerous new insights for understanding the molecular basis of human disease.