PT - JOURNAL ARTICLE AU - Fabian U. Zwettler AU - Marie-Christin Spindler AU - Sebastian Reinhard AU - Teresa Klein AU - Andreas Kurz AU - Markus Sauer AU - Ricardo Benavente TI - Tracking down the molecular architecture of the synaptonemal complex by expansion microscopy AID - 10.1101/821298 DP - 2019 Jan 01 TA - bioRxiv PG - 821298 4099 - http://biorxiv.org/content/early/2019/10/29/821298.short 4100 - http://biorxiv.org/content/early/2019/10/29/821298.full AB - The synaptonemal complex (SC) is a meiosis-specific nuclear multiprotein complex that is essential for proper synapsis, recombination and segregation of homologous chromosomes. We combined structured illumination microscopy (SIM) with different ExM protocols including U-ExM, proExM, and magnified analysis of the proteome (MAP) to investigate the molecular organization of the SC. Comparison with structural data obtained by single-molecule localization microscopy of unexpanded SCs allowed us to investigate ultrastructure preservation of expanded SCs. For image analysis, we developed an automatic image processing software that enabled unbiased expansion factor determination. Here, MAP-SIM provided the best results and enabled reliable three-color super-resolution microscopy of the SCs of a whole set of chromosomes in a spermatocyte with 20-30 nm spatial resolution. Our data demonstrate that post-expansion labeling by MAP-SIM improves immunolabeling efficiency and allowed us thus to unravel previously hidden details of the molecular organization of SCs.