PT - JOURNAL ARTICLE AU - Reika Watanabe AU - Robert Buschauer AU - Jan Böhning AU - Martina Audagnotto AU - Keren Lasker AU - Tsan Wen Lu AU - Daniela Boassa AU - Susan Taylor AU - Elizabeth Villa TI - The <em>in situ</em> structure of Parkinson’s disease-linked LRRK2 AID - 10.1101/837203 DP - 2019 Jan 01 TA - bioRxiv PG - 837203 4099 - http://biorxiv.org/content/early/2019/11/10/837203.short 4100 - http://biorxiv.org/content/early/2019/11/10/837203.full AB - Mutations in leucine-rich repeat kinase 2 (LRRK2) are the most frequent cause of familial Parkinson’s disease. LRRK2 is a multi-domain protein containing a kinase and GTPase. Using in situ cryo-electron tomography and subtomogram averaging, we reveal a 14-Å structure of LRRK2 bearing a pathogenic mutation that oligomerizes as a right-handed double-helix around microtubules, which are left-handed. Using integrative modeling, we determine the architecture of LRRK2, showing that the GTPase points towards the microtubule, while the kinase is exposed to the cytoplasm. We identify two oligomerization interfaces mediated by non-catalytic domains. Mutation of one of these abolishes LRRK2 microtubule-association. Our work demonstrates the power of cryo-electron tomography to obtain structures of previously unsolved proteins in their cellular environment and provides insights into LRRK2 function and pathogenicity.