### Overlap of Differentially expressed genes in each sex-asex comparison # Intersections = species pairs compared = Tbi = T. bartmani - T. tahoe; Tce = T. cristinae - T. monikensis; Tps = T. poppensis - T. douglasi; Tcm = T. californicum - T. shepardi; Tpa = T. podura - T. genevievae # Degree = number of sets overlapping # Observed.Overlap = observed overlap between sets # Expected.Overlap = expected overlap between sets # FE = fisher exact test # P.value = p value # FDR_BH = FDR # Tissue = Tissue used. WB = whole-body, RT = reproductive tract, LG = Legs Intersections Degree Observed.Overlap Expected.Overlap FE P.value FDR_BH Tissue Tbi 1 146 NA NA NA NA WB Tce 1 87 NA NA NA NA WB Tcm 1 63 NA NA NA NA WB Tpa 1 253 NA NA NA NA WB Tps 1 187 NA NA NA NA WB Tce & Tbi 2 10 4.255276382 2.350023618 0.008989408 0.040053919 WB Tce & Tpa 2 13 7.373869347 1.762982145 0.029471702 0.076626426 WB Tcm & Tbi 2 9 3.081407035 2.92074364 0.00307476 0.029812518 WB Tcm & Tce 2 6 1.836180905 3.267651888 0.009243212 0.040053919 WB Tcm & Tpa 2 8 5.339698492 1.498211933 0.160083299 0.24483328 WB Tpa & Tbi 2 23 12.37453936 1.858655044 0.002214239 0.029812518 WB Tps & Tbi 2 14 9.14639866 1.530657095 0.069757941 0.139515881 WB Tps & Tce 2 8 5.450251256 1.467822239 0.175244911 0.253131539 WB Tps & Tcm 2 5 3.946733668 1.266870385 0.360089409 0.445824982 WB Tps & Tpa 2 27 15.84958124 1.703515039 0.003439906 0.029812518 WB Tce & Tpa & Tbi 3 2 0.360664966 5.545312649 0.05069534 0.109839903 WB Tcm & Tce & Tbi 3 1 0.089809853 11.13463572 0.08601772 0.159747193 WB Tcm & Tce & Tpa 3 1 0.155629403 6.425521006 0.144439793 0.234714664 WB Tcm & Tpa & Tbi 3 1 0.261171183 3.828906353 0.230532806 0.315465945 WB Tps & Tce & Tbi 3 2 0.266578453 7.502481819 0.029344703 0.076626426 WB Tps & Tce & Tpa 3 3 0.461947594 6.494243156 0.011188257 0.041556385 WB Tps & Tcm & Tbi 3 2 0.19303957 10.36057013 0.016059173 0.052192311 WB Tps & Tcm & Tce 3 1 0.115030429 8.693351949 0.108848715 0.188671106 WB Tps & Tcm & Tpa 3 1 0.334513775 2.989413516 0.285295094 0.370883622 WB Tps & Tpa & Tbi 3 3 0.775222399 3.869857223 0.04290391 0.101409241 WB Tcm & Tce & Tpa & Tbi 4 0 0.007612024 0 1 1 WB Tps & Tce & Tpa & Tbi 4 0 0.022594422 0 1 1 WB Tps & Tcm & Tce & Tbi 4 1 0.005626279 177.7373669 0.00561108 0.03647202 WB Tps & Tcm & Tce & Tpa 4 0 0.009749648 0 1 1 WB Tps & Tcm & Tpa & Tbi 4 0 0.016361478 0 1 1 WB Tps & Tcm & Tce & Tpa & Tbi 5 0 0.000476867 0 1 1 WB Tbi 1 123 NA NA NA NA RT Tce 1 433 NA NA NA NA RT Tcm 1 131 NA NA NA NA RT Tpa 1 562 NA NA NA NA RT Tps 1 102 NA NA NA NA RT Tce & Tbi 2 16 19.33877996 0.827353123 0.834529758 1 RT Tce & Tpa 2 76 88.36092956 0.860108652 0.954267752 1 RT Tcm & Tbi 2 10 5.850762527 1.709178924 0.064673849 0.168152008 RT Tcm & Tce 2 17 20.59658678 0.825379476 0.843476693 1 RT Tcm & Tpa 2 39 26.73275236 1.458884573 0.005873807 0.030543798 RT Tpa & Tbi 2 39 25.10021786 1.553771374 0.001689953 0.014646258 RT Tps & Tbi 2 9 4.555555556 1.975609756 0.036158602 0.117515457 RT Tps & Tce 2 18 16.03703704 1.122401848 0.333684606 0.542237484 RT Tps & Tcm 2 12 4.851851852 2.473282443 0.002771245 0.018013094 RT Tps & Tpa 2 29 20.81481481 1.393238434 0.030546643 0.117515457 RT Tce & Tpa & Tbi 3 4 3.946403172 1.013581184 0.560316875 0.809346597 RT Tcm & Tce & Tbi 3 2 0.919891131 2.174170326 0.234549134 0.406551833 RT Tcm & Tce & Tpa 3 4 4.203079801 0.951683097 0.610417862 0.835308653 RT Tcm & Tpa & Tbi 3 4 1.193946456 3.35023399 0.031682884 0.117515457 RT Tps & Tce & Tbi 3 0 0.716251109 0 1 1 RT Tps & Tce & Tpa 3 5 3.272627021 1.527824579 0.229451484 0.406551833 RT Tps & Tcm & Tbi 3 1 0.216694908 4.614783094 0.19529234 0.39058468 RT Tps & Tcm & Tce 3 1 0.762836548 1.310896814 0.536250203 0.809346597 RT Tps & Tcm & Tpa 3 6 0.990101939 6.059982071 0.000463199 0.006021584 RT Tps & Tpa & Tbi 3 6 0.929637699 6.454127246 0.000330508 0.006021584 RT Tcm & Tce & Tpa & Tbi 4 1 0.18771925 5.327104162 0.171425828 0.371422626 RT Tps & Tce & Tpa & Tbi 4 0 0.14616308 0 1 1 RT Tps & Tcm & Tce & Tbi 4 0 0.034070042 0 1 1 RT Tps & Tcm & Tce & Tpa 4 1 0.155669622 6.423860902 0.144369266 0.341236448 RT Tps & Tcm & Tpa & Tbi 4 1 0.044220239 22.61407943 0.043281147 0.125034425 RT Tps & Tcm & Tce & Tpa & Tbi 5 0 0.006952565 0 1 1 RT Tbi 1 522 NA NA NA NA LG Tce 1 287 NA NA NA NA LG Tcm 1 222 NA NA NA NA LG Tpa 1 627 NA NA NA NA LG Tps 1 524 NA NA NA NA LG Tce & Tbi 2 77 54.73657289 1.406737688 0.000421994 0.002742958 LG Tce & Tpa 2 78 65.74680307 1.186369471 0.04223287 0.064591449 LG Tcm & Tbi 2 49 42.33978809 1.157303856 0.136696757 0.18705872 LG Tcm & Tce 2 29 23.27877238 1.24577016 0.118095881 0.170582939 LG Tcm & Tpa 2 55 50.85641213 1.081476213 0.269312747 0.333434829 LG Tpa & Tbi 2 161 119.5812934 1.346364431 1.90E-06 4.95E-05 LG Tps & Tbi 2 115 99.93715747 1.150723144 0.03716083 0.061767018 LG Tps & Tce 2 59 54.94629156 1.073775833 0.28358698 0.335148249 LG Tps & Tcm 2 63 42.5020095 1.482282855 0.000320742 0.002742958 LG Tps & Tpa 2 136 120.0394593 1.132960785 0.038010473 0.061767018 LG Tce & Tpa & Tbi 3 25 12.53921491 1.993745237 0.000737074 0.003193988 LG Tcm & Tce & Tbi 3 7 4.439722025 1.576675288 0.157180736 0.204334957 LG Tcm & Tce & Tpa 3 12 5.332769558 2.250237868 0.00725204 0.018855303 LG Tcm & Tpa & Tbi 3 11 9.69932303 1.134099768 0.377888468 0.427178269 LG Tps & Tce & Tbi 3 19 10.47934388 1.813090611 0.008776744 0.020745031 LG Tps & Tce & Tpa 3 23 12.58725788 1.827244681 0.003683896 0.010642365 LG Tps & Tcm & Tbi 3 15 8.105973313 1.850487217 0.01587541 0.03175082 LG Tps & Tcm & Tce 3 9 4.456732454 2.019416712 0.035038146 0.061767018 LG Tps & Tcm & Tpa 3 22 9.736485187 2.259542286 0.000278823 0.002742958 LG Tps & Tpa & Tbi 3 38 22.8938976 1.659830959 0.00128742 0.004781848 LG Tcm & Tce & Tpa & Tbi 4 0 1.017064563 0 1 1 LG Tps & Tce & Tpa & Tbi 4 8 2.400638879 3.332446238 0.002998373 0.009744713 LG Tps & Tcm & Tce & Tbi 4 0 0.849986971 0 1 1 LG Tps & Tcm & Tce & Tpa 4 6 1.020961362 5.876813973 0.000593449 0.003085933 LG Tps & Tcm & Tpa & Tbi 4 6 1.856940178 3.231121859 0.011204226 0.024275822 LG Tps & Tcm & Tce & Tpa & Tbi 5 0 0.194717512 0 1 1 LG