# organism = species of Timema # rep = replicate number # Tissue_code = WB = whole-body, RT = reproductive tissue, LG = legs # N_ind_in_sample = Number of individuals in sample # propagation = sexual or asexual reproduction # tissue = tissue name # population_name # lat_lon = latitude and longitude of population # biosample_accession = Biosample accession number # SRA_accession = SRA accession number # N_raw_reads = Number of raw reads # N_raw_reads_after_sampling = Number of reads after sampling # N_qualfilt_reads = Number of reads after quality filtering (see main text) organism rep Tissue_code N_ind_in_sample propagation tissue population_name lat_lon biosample_accession SRA_accession N_raw_reads N_raw_reads_after_sampling N_qualfilt_reads Timema bartmani 1 RT 3 sex reproductive tract Jenks Lake 34.1700 N 117.0020 W SAMN07297519 SRR5786903 34058274 34058274 28770498 Timema bartmani 2 RT 3 sex reproductive tract Jenks Lake 34.1700 N 117.0020 W SAMN07297520 SRR5786904 33014426 33014426 28055647 Timema bartmani 3 RT 3 sex reproductive tract Jenks Lake 34.1700 N 117.0020 W SAMN07297521 SRR5786905 24755514 24755514 21290646 Timema bartmani 1 LG 3 sex leg Jenks Lake 34.1700 N 117.0020 W SAMN07297525 SRR5786908 27709960 27709960 23674411 Timema bartmani 2 LG 3 sex leg Jenks Lake 34.1700 N 117.0020 W SAMN07297526 SRR5786910 29990039 29990039 25808151 Timema bartmani 3 LG 3 sex leg Jenks Lake 34.1700 N 117.0020 W SAMN07297527 SRR5786900 28901834 28901834 24838505 Timema bartmani 1 WB 3 sexual whole body Jenks Lake 34.1700 N 117.0020 W SAMN07268471 SRR5748944 64028552 31428734 27421284 Timema bartmani 2 WB 3 sexual whole body Jenks Lake 34.1700 N 117.0020 W SAMN07268472 SRR5748943 30569176 30569176 25156696 Timema bartmani 3 WB 3 sexual whole body Jenks Lake 34.1700 N 117.0020 W SAMN07268473 SRR5748942 32110961 32110961 26356549 Timema californicum 1 RT 3 sex reproductive tract Saratoga 37.2229 N 122.0872 W SAMN07297555 SRR5786833 28443167 28443167 24330355 Timema californicum 2 RT 6 sex reproductive tract Hamilton 37.3432 N 121.6365 W SAMN07297556 SRR5786837 26713987 26713987 23088799 Timema californicum 3 RT 3 sex reproductive tract Summit Rd 37.2224 N 122.0879 W SAMN07297557 SRR5786827 29960641 29960641 25430628 Timema californicum 1 LG 3 sex leg Saratoga 37.2229 N 122.0872 W SAMN07297561 SRR5786846 32707633 32707633 26619049 Timema californicum 2 LG 6 sex leg Hamilton 37.3432 N 121.6365 W SAMN07297562 SRR5786844 29801656 29801656 24956028 Timema californicum 3 LG 3 sex leg Summit Rd 37.2224 N 122.0879 W SAMN07297563 SRR5786843 29108719 29108719 24373794 Timema californicum 1 WB 3 sexual whole body Saratoga 37.2229 N 122.0872 W SAMN07268489 SRR5748989 34307930 34307930 28185666 Timema californicum 2 WB 2 sexual whole body Hamilton 37.3432 N 121.6365 W SAMN07268490 SRR5748987 39515593 39515593 28600015 Timema californicum 3 WB 3 sexual whole body Summit Rd 37.2224 N 122.0879 W SAMN07268491 SRR5748958 36307633 36307633 27286221 Timema cristinae 1 RT 3 sex reproductive tract A006 34.5227 N 119.2767 W SAMN07297537 SRR5786915 22367509 22367509 19443908 Timema cristinae 2 RT 6 sex reproductive tract A007/A008 34.5363 N 119.2444 W SAMN07297538 SRR5786916 26599533 26599533 22838188 Timema cristinae 3 RT 3 sex reproductive tract WTA 34.5158 N 120.0732 W SAMN07297539 SRR5786945 36809595 36809595 30955772 Timema cristinae 1 LG 3 sex leg A006 34.5227 N 119.2767 W SAMN07297543 SRR5786948 31054662 31054662 24844855 Timema cristinae 2 LG 6 sex leg A007/A008 34.5363 N 119.2444 W SAMN07297544 SRR5786947 30729701 30729701 24846957 Timema cristinae 3 LG 3 sex leg WTA 34.5158 N 120.0732 W SAMN07297545 SRR5786951 26517239 26517239 21413996 Timema cristinae 1 WB 3 sexual whole body SC 34.5223 N 119.8313 W SAMN07268480 SRR5748950 29996879 29996879 24084777 Timema cristinae 2 WB 3 sexual whole body Ojaj#1 34.4936 N 119.3061 W SAMN07268481 SRR5748981 36008167 36008167 26714791 Timema cristinae 3 WB 3 sexual whole body A007/A008 34.5363 N 119.2444 W SAMN07268482 SRR5748979 31876562 31876562 23659930 Timema douglasi 1 RT 3 asex reproductive tract Manchester 38.9826 N 123.4698 W SAMN07297573 SRR5786857 27474336 27474336 23610460 Timema douglasi 2 RT 3 asex reproductive tract Manchester 38.9826 N 123.4698 W SAMN07297574 SRR5786858 31584016 31584016 27002796 Timema douglasi 3 RT 6 asex reproductive tract Orr Rd 39.1927 N 123.2618 W SAMN07297575 SRR5786859 31371085 31371085 27039777 Timema douglasi 1 LG 3 asex leg Manchester 38.9826 N 123.4698 W SAMN07297579 SRR5786866 29365342 29365342 24199652 Timema douglasi 2 LG 3 asex leg Manchester 38.9826 N 123.4698 W SAMN07297580 SRR5786865 29937591 29937591 24125164 Timema douglasi 3 LG 6 asex leg Orr Rd 39.1927 N 123.2618 W SAMN07297581 SRR5786868 30249572 30249572 24472885 Timema douglasi 1 WB 3 asexual whole body Orr Rd 39.2008 N 123.2939 W SAMN07268498 SRR5748957 31850279 31850279 26469759 Timema douglasi 2 WB 2 asexual whole body Manchester 38.9826 N 123.4698 W SAMN07268499 SRR5748966 33109499 33109499 27287458 Timema douglasi 3 WB 3 asexual whole body Orr Rd 39.2008 N 123.2939 W SAMN07268500 SRR5748967 35241242 35241242 28959818 Timema genevievae 1 RT 6 asex reproductive tract HW20 38.9958 N 122.9258 W SAMN07297582 SRR5786867 29675536 29675536 25443249 Timema genevievae 2 RT 6 asex reproductive tract HW20 38.9958 N 122.9258 W SAMN07297583 SRR5786862 31684781 31684781 27475934 Timema genevievae 3 RT 6 asex reproductive tract HW20 38.9958 N 122.9258 W SAMN07297584 SRR5786861 27725743 27725743 24191128 Timema genevievae 1 LG 6 asex leg HW20 38.9958 N 122.9258 W SAMN07297588 SRR5786869 30630695 30630695 26343007 Timema genevievae 2 LG 6 asex leg HW20 38.9958 N 122.9258 W SAMN07297589 SRR5786887 29316112 29316112 25281012 Timema genevievae 3 LG 6 asex leg HW20 38.9958 N 122.9258 W SAMN07297590 SRR5786888 31000566 31000566 25961287 Timema genevievae 1 WB 3 asexual whole body HW20 38.9958 N 122.9258 W SAMN07268501 SRR5748991 34027819 34027819 28202232 Timema genevievae 2 WB 3 asexual whole body Antonio 37.3283 N 121.4855 W SAMN07268502 SRR5748990 33095129 33095129 26612671 Timema genevievae 3 WB 3 asexual whole body HW20 38.9958 N 122.9258 W SAMN07268503 SRR5748963 32453626 32453626 26029685 Timema monikensis 1 RT 6 asex reproductive tract FS 34.1149 N 118.8531 W SAMN07297591 SRR5786885 29129816 29129816 25290320 Timema monikensis 2 RT 6 asex reproductive tract FS 34.1149 N 118.8531 W SAMN07297592 SRR5786886 30848949 30848949 26692979 Timema monikensis 3 RT 6 asex reproductive tract FS 34.1149 N 118.8531 W SAMN07297593 SRR5786883 31796007 31796007 27196738 Timema monikensis 1 LG 6 asex leg FS 34.1149 N 118.8531 W SAMN07297597 SRR5786889 26513007 26513007 22126366 Timema monikensis 2 LG 6 asex leg FS 34.1149 N 118.8531 W SAMN07297598 SRR5786890 25503096 25503096 21332926 Timema monikensis 3 LG 6 asex leg FS 34.1149 N 118.8531 W SAMN07297599 SRR5786937 24510380 24510380 20456093 Timema monikensis 1 WB 3 asexual whole body Decker 34.1029 N 118.8618 W SAMN07268504 SRR5748952 33488670 33488670 26842871 Timema monikensis 2 WB 2 asexual whole body FS 34.1149 N 118.8531 W SAMN07268505 SRR5748994 35220163 35220163 25660455 Timema monikensis 3 WB 3 asexual whole body Sycamore 34.1075 N 118.9092 W SAMN07268506 SRR5748993 38436976 38436976 27744042 Timema podura 1 RT 2 sex reproductive tract EDNA 33.8852 N 116.8598 W SAMN07297600 SRR5786936 28343569 28343569 24073749 Timema podura 2 RT 1 sex reproductive tract EDNA 33.8852 N 116.8598 W SAMN07297601 SRR5786935 31001358 31001358 26488782 Timema podura 3 RT 2 sex reproductive tract HW74 33.6575 N 117.3975 W SAMN07297602 SRR5786934 27762780 27762780 23778142 Timema podura 1 LG 2 sex leg EDNA 33.8852 N 116.8598 W SAMN07297606 SRR5786849 29209010 29209010 25145387 Timema podura 2 LG 1 sex leg EDNA 33.8852 N 116.8598 W SAMN07297607 SRR5786838 31833155 31833155 27156103 Timema podura 3 LG 2 sex leg HW74 33.6575 N 117.3975 W SAMN07297608 SRR5786836 30564667 30564667 26415682 Timema podura 1 WB 3 sexual whole body Vista 33.7976 N 116.7769 W SAMN07268507 SRR5748996 22025312 22025312 18100569 Timema podura 2 WB 1 sexual whole body Vista 33.7976 N 116.7769 W SAMN07268508 SRR5748992 32151448 32151448 26083122 Timema podura 3 WB 1 sexual whole body Vista 33.7976 N 116.7769 W SAMN07268509 SRR5748999 41858040 41858040 33172083 Timema poppensis 1 RT 9 sex reproductive tract Bear Creek 37.1655 N 122.0156 W SAMN07297618 SRR5786961 29975919 29975919 25925652 Timema poppensis 2 RT 9 sex reproductive tract Bear Creek 37.1655 N 122.0156 W SAMN07297619 SRR5786896 25142381 25142381 21596365 Timema poppensis 3 RT 9 sex reproductive tract Bear Creek 37.1655 N 122.0156 W SAMN07297620 SRR5786895 26654736 26654736 22854513 Timema poppensis 1 LG 9 sex leg Bear Creek 37.1655 N 122.0156 W SAMN07297624 SRR5786898 23896929 23896929 19422548 Timema poppensis 2 LG 9 sex leg Bear Creek 37.1655 N 122.0156 W SAMN07297625 SRR5786901 26676672 26676672 22221876 Timema poppensis 3 LG 9 sex leg Bear Creek 37.1655 N 122.0156 W SAMN07297626 SRR5786897 33000421 33000421 27016567 Timema poppensis 1 WB 3 sexual whole body Madonna 36.9964 N 121.7178 W SAMN07268516 SRR5748965 27970649 27970649 22758764 Timema poppensis 2 WB 3 sexual whole body Bear Creek 37.1655 N 122.0156 W SAMN07268517 SRR5748961 30690280 30690280 25532112 Timema poppensis 3 WB 3 sexual whole body Summit Rd 37.2223 N 122.0878 W SAMN07268518 SRR5748962 28390435 28390435 23934808 Timema shepardi 1 RT 3 asex reproductive tract Fish 38.8232 N 123.5814 W SAMN07297636 SRR5786876 25115351 25115351 21687936 Timema shepardi 2 RT 6 asex reproductive tract Orr Rd 39.1927 N 123.2618 W SAMN07297637 SRR5786871 29392464 29392464 25145981 Timema shepardi 3 RT 6 asex reproductive tract Upper Lake 39.2652 N 122.9299 W SAMN07297638 SRR5786872 31159462 31159462 26503724 Timema shepardi 1 LG 3 asex leg Fish 38.8232 N 123.5814 W SAMN07297642 SRR5786931 28657842 28657842 23841735 Timema shepardi 2 LG 6 asex leg Orr Rd 39.1927 N 123.2618 W SAMN07297643 SRR5786927 31954806 31954806 26217294 Timema shepardi 3 LG 6 asex leg Upper Lake 39.2652 N 122.9299 W SAMN07297644 SRR5786926 29826115 29826115 24107766 Timema shepardi 1 WB 3 asexual whole body Manchester 39.2781 N 122.9278 W SAMN07268525 SRR5748978 28230752 28230752 22753475 Timema shepardi 2 WB 1 asexual whole body Fish 38.8232 N 123.5814 W SAMN07268526 SRR5748995 35312314 35312314 25860596 Timema shepardi 3 WB 3 asexual whole body Orr Rd 39.1927 N 123.2618 W SAMN07268527 SRR5748970 33682559 33682559 24892367 Timema tahoe 1 RT 1 asex reproductive tract Bliss 38.9755 N 120.0996 W SAMN07297645 SRR5786929 41837441 28448865 25165649 Timema tahoe 2 RT 2 asex reproductive tract Vista 39.0592 N 119.9444 W SAMN07297646 SRR5786928 50924010 34627623 30592874 Timema tahoe 3 RT 1 asex reproductive tract SP 38.7610 N 120.1601 W SAMN07297647 SRR5786938 48117436 32717979 28762350 Timema tahoe 1 LG 1 asex leg Bliss 38.9755 N 120.0996 W SAMN07297651 SRR5786912 47063546 32001788 28620976 Timema tahoe 2 LG 2 asex leg Vista 39.0592 N 119.9444 W SAMN07297652 SRR5786913 47115995 32037440 28519021 Timema tahoe 3 LG 1 asex leg SP 38.7610 N 120.1601 W SAMN07297653 SRR5786911 43691344 29709840 26334826 Timema tahoe 1 WB 1 asexual whole body SP 38.7610 N 120.1601 W SAMN07268528 SRR5748997 81891157 32759767 29466235 Timema tahoe 2 WB 1 asexual whole body SP 38.7610 N 120.1601 W SAMN07268529 SRR5748977 71027796 31966250 28963440 Timema tahoe 3 WB 1 asexual whole body SP 38.7610 N 120.1601 W SAMN07268530 SRR5749000 70039756 31522181 28280871