## These 60 strains were used to calculate a set of panorthologs, representing the core genome of E. coli. NCBI Refseq ID,Strain name,lifestyle NC_000913,Escherichia coli K-12 MG1655, commensal NC_002655,Escherichia coli O157-H7 str EDL933, pathogen NC_002695,Escherichia coli O157-H7 str Sakai, pathogen NC_004431,Escherichia coli CFT073, pathogen NC_007779,Escherichia coli str K-12 substr W3110, commensal NC_007946,Escherichia coli UTI89, pathogen NC_008253,Escherichia coli 536, pathogen NC_008563,Escherichia coli APEC O1, pathogen NC_009800,Escherichia coli HS, commensal NC_009801,Escherichia coli E24377A, pathogen NC_010468,Escherichia coli ATCC 8739, commensal NC_010473,Escherichia coli str K-12 substr DH10B, commensal NC_010498,Escherichia coli SMS-3-5, commensal NC_011353,Escherichia coli O157-H7 str EC4115, pathogen NC_011415,Escherichia coli SE11, commensal NC_011601,Escherichia coli O127-H6 str E2348-69, pathogen NC_011741,Escherichia coli IAI1, pathogen NC_011742,Escherichia coli S88, pathogen NC_011745,Escherichia coli ED1a, commensal NC_011748,Escherichia coli 55989, pathogen NC_011750,Escherichia coli IAI39, pathogen NC_011751,Escherichia coli UMN026, pathogen NC_011993,Escherichia coli LF82, pathogen NC_012759,Escherichia coli BW2952, commensal NC_012892,Escherichia coli BL21-DE3-1, commensal NC_012947,Escherichia coli BL21-Gold-DE3-pLysS AG, commensal NC_012967,Escherichia coli B str REL606, commensal NC_012971,Escherichia coli BL21-DE3-2, commensal NC_013008,Escherichia coli O157-H7 str TW14359, pathogen NC_013353,Escherichia coli O103-H2 str 12009, pathogen NC_013361,Escherichia coli O26-H11 str 11368, pathogen NC_013364,Escherichia coli O111-H- str 11128, pathogen NC_013654,Escherichia coli SE15, commensal NC_013941,Escherichia coli O55-H7 str CB9615, pathogen NC_016902,Escherichia coli KO11FL 1, commensal NC_017625,Escherichia coli DH1 1, commensal NC_017626,Escherichia coli 042, pathogen NC_017628,Escherichia coli IHE3034, commensal NC_017631,Escherichia coli ABU 83972, commensal NC_017632,Escherichia coli UM146, pathogen NC_017633,Escherichia coli ETEC H10407, pathogen NC_017634,Escherichia coli O83-H1 str NRG 857C, pathogen NC_017635,Escherichia coli W 1, commensal NC_017638,Escherichia coli DH1 2, commensal NC_017641,Escherichia coli UMNK88, pathogen NC_017644,Escherichia coli NA114, pathogen NC_017646,Escherichia coli O7-K1 str CE10, pathogen NC_017651,Escherichia coli str clone D i2, pathogen NC_017652,Escherichia coli str clone D i14, pathogen NC_017656,Escherichia coli O55-H7 str RM12579, pathogen NC_017660,Escherichia coli KO11FL 2, commensal NC_017663,Escherichia coli P12b, pathogen NC_017664,Escherichia coli W 2, commensal NC_017906,Escherichia coli Xuzhou21, pathogen NC_018650,Escherichia coli O104-H4 str 2009EL-2050, pathogen NC_018658,Escherichia coli O104-H4 str 2011C-3493, pathogen NC_018661,Escherichia coli O104-H4 str 2009EL-2071, pathogen NC_020163,Escherichia coli APEC O78, pathogen NC_020518,Escherichia coli str K-12 substr MDS42 DNA, commensal NC_022364,Escherichia coli LY180, commensal