keyword	num_all	exp_all_between	exp_all_present	exp_all_pangenome	num_gains	exp_gains_between	exp_gains_present	exp_gains_pangenome	num_loss	exp_loss_between	exp_loss_present	exp_loss_pangenome	gene_names
hypothetical	1936	1786.51	1057.1	1505.03	930	851.76	499.22	1501.69	1006	934.11	556.25	1499.65	FIG01056772: hypothetical protein;FIG00517673: hypothetical protein;FIG00528192: hypothetical protein;FIG01019950: hypothetical protein;FIG00416802: hypothetical protein;FIG01273874: hypothetical protein;FIG01290742: hypothetical protein;FIG01101450: hypothetical protein;FIG01057005: hypothetical protein;FIG00938992: hypothetical protein;FIG00899057: hypothetical protein;FIG00404777: hypothetical protein;FIG01020098: hypothetical protein;FIG00897642: hypothetical protein;FIG00417685: hypothetical protein;FIG00897908: hypothetical protein;FIG00414507: hypothetical protein;conserved hypothetical protein;FIG00405495: hypothetical protein;FIG00897980: hypothetical protein;FIG00514472: hypothetical protein;FIG00515792: hypothetical protein;FIG00939652: hypothetical protein;FIG00533143: hypothetical protein;FIG00531210: hypothetical protein;FIG00896355: hypothetical protein;FIG00935812: hypothetical protein;FIG00403601: hypothetical protein;FIG00899114: hypothetical protein;FIG00897673: hypothetical protein;FIG00898246: hypothetical protein;FIG00897793: hypothetical protein;FIG00402815: hypothetical protein;FIG00524930: hypothetical protein;FIG00410332: hypothetical protein;FIG00412297: hypothetical protein;FIG01231397: hypothetical protein;FIG00896865: hypothetical protein;FIG00897411: hypothetical protein;FIG00897171: hypothetical protein;FIG00409263: hypothetical protein;FIG00937196: hypothetical protein;FIG00524942: hypothetical protein;conserved hypothetical fusion protein;FIG00897594: hypothetical protein;FIG00409721: hypothetical protein;Hypothetical protein clustered with UpdY;FIG00408502: hypothetical protein;FIG00938698: hypothetical protein;FIG00518470: hypothetical protein;FIG00402688: hypothetical protein;FIG00515953: hypothetical protein;FIG005429: hypothetical protein;FIG00407344: hypothetical protein;FIG00407212: hypothetical protein;FIG00526148: hypothetical protein;FIG01032338: hypothetical protein;FIG00521858: hypothetical protein;FIG00407626: hypothetical protein;FIG00896953: hypothetical protein;FIG00937326: hypothetical protein;FIG00407625: hypothetical protein;FIG00898446: hypothetical protein;FIG00409942: hypothetical protein;FIG01020118: hypothetical protein;FIG00409900: hypothetical protein;FIG00937084: hypothetical protein;FIG00938987: hypothetical protein;FIG00515822: hypothetical protein;FIG00402952: hypothetical protein;FIG01020163: hypothetical protein;FIG01117768: hypothetical protein;FIG00937566: hypothetical protein;FIG00898505: hypothetical protein;FIG00937499: hypothetical protein;FIG00897538: hypothetical protein;FIG00896660: hypothetical protein;FIG00527424: hypothetical protein;FIG00407633: hypothetical protein;FIG00408583: hypothetical protein;FIG00414149: hypothetical protein;FIG00405988: hypothetical protein;FIG00897206: hypothetical protein;FIG00525840: hypothetical protein;FIG00407789: hypothetical protein;FIG00939874: hypothetical protein;FIG00899205: hypothetical protein;hypothetical protein;FIG01032240: hypothetical protein;FIG00404129: hypothetical protein;FIG00936922: hypothetical protein;FIG00406346: hypothetical protein;FIG00899072: hypothetical protein;FIG01109228: hypothetical protein;FIG00897775: hypothetical protein;FIG00898120: hypothetical protein;FIG00406507: hypothetical protein;FIG00409316: hypothetical protein;FIG00494375: hypothetical protein;FIG00404275: hypothetical protein;FIG00418020: hypothetical protein;FIG00416348: hypothetical protein;FIG00897753: hypothetical protein;FIG00936811: hypothetical protein;FIG00898428: hypothetical protein;FIG00938196: hypothetical protein;FIG00406924: hypothetical protein;FIG00899284: hypothetical protein;Hypothetical protein BF1253;FIG00408295: hypothetical protein;FIG00406210: hypothetical protein;FIG00409213: hypothetical protein;FIG00412175: hypothetical protein;FIG00898503: hypothetical protein;FIG00897069: hypothetical protein;FIG00403730: hypothetical protein
transposon	396	127.58	40.45	114.22	184	59.46	14.14	113.85	212	64.31	25.03	114.49	Transposase, Gmet_2093 family;probable transposase;conjugative transposon protein;Putative transposase;Conjugative transposon protein TraQ;Conjugative transposon protein TraM;Conjugative transposon protein TraL;Conjugative transposon protein TraO;Conjugative transposon protein TraN;Conjugative transposon protein TraI;Conjugative transposon protein TraH;Conjugative transposon protein TraK;Conjugative transposon protein TraJ;Conjugative transposon protein TraE;Conjugative transposon protein TraD;Conjugative transposon protein TraG;Conjugative transposon protein TraF;Conjugative transposon protein TraA;Conjugative transposon protein TraB;hypothetical protein clusted with conjugative transposons, BF0131;conjugation protein;Conjugative transposon protein TraP @ DNA primase (EC 2.7.7.-);ISCps8, transposase;conserved protein found in conjugate transposon;putative protein involved in transposition;Transposase, Sph21_1677 family;"Conjugative transposon protein TraP @ DNA primase ";Transposase, mutator type;ISNCY family transposase;mobilizable transposon, xis protein;putative transposase;Mobilizable transposon, tnpC protein;Putative conjugative transposon mobilization protein BF0132;transposase;Transposase, IS4;Transposase;Similar to conjugative transposon protein TraB;Similar to conjugative transposon protein TraH
mobilization	101	41.07	13.32	34.87	49	18.08	4.32	35.72	52	21.98	7.6	34.91	mobilization protein MocB;Mobilization protein;conserved hypothetical protein with relaxase/mobilization nuclease domain;Mobilization protein BmgA;Mobilization protein BmgB;Tetracycline resistance element mobilization regulatory protein rteC;mobilization protein BmpH;Putative mobilization protein BF0133;mobB;putative mobilization protein;Mobile element protein;Mobilization protein BmpH
restriction	60	25.54	5.71	18.0	25	12.57	2.17	18.16	35	12.54	3.23	18.77	Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72);Antirestriction protein ArdA;Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal;Type I restriction-modification system, restriction subunit R (EC 3.1.21.3);Putative DNA-binding protein in cluster with Type I restriction-modification system;Type I restriction enzyme, M subunit;Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N- terminal;Type II restriction endonuclease;putative type IIS restriction/modification enzyme;Type I restriction-modification system, specificity subunit S (EC 3.1.21.3);type III restriction protein res subunit
integrase	57	30.04	10.3	24.02	26	14.15	4.4	23.57	31	16.29	5.79	23.3	integrase protein;Integrase;Integrase IntN1;Integrase protein;probable integrase/recombinase;putative integrase/recombinase;integron integrase;integrase/recombinase
tRNA	44	3.15	3.64	10.96	12	1.52	1.26	9.55	32	2.01	1.72	9.93	tRNA-Pseudo-GCG;tRNA-Thr-GGT;tRNA-Tyr-GTA;tRNA-Arg-TCT;tRNA-Val-GAC;tRNA-Ile-GAT;tRNA-Gln-TTG;tRNA-Pro-GGG;tRNA-Thr-CGT;tRNA-Glu-CTC;tRNA-Ala-TGC;tRNA-Glu-TTC;tRNA-Thr-TGT;tRNA-Arg-CCT;tRNA-Met-CAT;tRNA-Cys-GCA;tRNA-Trp-CCA;tRNA-Gln-CTG;Asparaginyl-tRNA synthetase (EC 6.1.1.22);tRNA-Phe-GAA;tRNA-Gly-GCC
regulator	42	35.88	48.81	40.39	19	16.43	23.56	39.76	23	19.68	24.85	39.06	putative transcriptional regulator;Transcriptional regulator, TetR family;Transcriptional regulator, HxlR family;transcriptional regulator, putative;Transcriptional regulator, LuxR family;transcriptional regulator;Tn916, transcriptional regulator, putative;Response regulator of two-component system;Two-component system response regulator;Two-component response regulator;tetracycline resistance element regulator RteB - Bacteroides thetaiotaomicron;Transcriptional regulator;RteB, two-component system response regulator;Transcriptional regulator, AraC family;Accessory gene regulator B;cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases;Regulatory sensor-transducer, BlaR1/MecR1 family / TonB-dependent receptor;Transcriptional regulator of various polyols utilization, AraC family
transferase	42	39.35	20.49	27.75	18	18.44	9.41	26.15	24	21.74	10.8	26.17	DNA-cytosine methyltransferase (EC 2.1.1.37);Ubiquinone/menaquinone biosynthesis methyltransferase UbiE;Galactoside O-acetyltransferase (EC 2.3.1.18);Glycosyltransferase (EC 2.4.1.-);acetyltransferase;Spectinomycin 9-O-adenylyltransferase;Sugar-phosphate guanylyltransferase / Sugar-phosephate isomerase;adenine/cytosine DNA methyltransferase;Nucleotidyltransferase domain protein, BT0168 group;Putative acetyltransferase / Putative acetyltransferase, GNAT family / DNA-3-methyladenine glycosylase (EC 3.2.2.20) / GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2);Glycosyltransferase;Cob(I)alamin adenosyltransferase (EC 2.5.1.17);DNA-methyltransferase;Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33);23S rRNA (adenine(2085)-N(6))-dimethyltransferase (EC 2.1.1.184);Chloramphenicol acetyltransferase (EC 2.3.1.28);Methyltransferase type 12;Colanic acid biosynthesis glycosyl transferase WcaE;Aminoglycoside 6-adenylyltransferase (EC 2.7.7.-);Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16);putative aminoglycoside 6-adenylyltansferase;"Probable glycosyl transferase ";Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy;CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12);Acetyltransferase, GNAT family;glycosyl transferase, group 1;Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33);Adenine-specific methyltransferase (EC 2.1.1.72);Serine acetyltransferase (EC 2.3.1.30);Glycerol-3-phosphate cytidylyltransferase (EC 2.7.7.39) / NAD-dependent oxidoreductase;Probable UDP-N-acetyl-D-mannosaminuronic acid transferase (EC 2.4.1.-)
primase	30	11.72	3.81	9.32	13	5.19	1.36	9.77	17	6.13	2.66	8.96	DNA primase (EC 2.7.7.-);putative DNA primase;DNA primase TraC
ATP	28	11.37	6.66	9.06	12	4.99	2.82	9.61	16	5.71	3.47	9.93	Prokaryotic ATPase;Putative ATP-binding protein;ATP-dependent DNA helicase RecG;ATPase, AAA family;archaeal ATPase, fused to C-terminal DUF234 domain;ATP-dependent helicase;ATP-dependent DNA helicase;ATPase;predicted ATP-dependent endonuclease, OLD family;Predicted ATPase (AAA+ superfamily);FIG131328: Predicted ATP-dependent endonuclease of the OLD family
transmembrane	26	83.26	70.04	52.35	16	41.25	33.69	51.62	10	41.83	35.75	52.15	SusD, outer membrane protein;SusC, outer membrane protein involved in starch binding;Outer membrane protein oprM;Putative transmembrane protein;Putative outer membrane protein, probably involved in nutrient binding;RND efflux system, inner membrane transporter;Outer membrane protein;Polysaccharide export outer membrane protein;Membrane proteins related to metalloendopeptidases;putative membrane protein
phage	22	8.15	1.7	5.46	11	3.77	0.93	5.42	11	3.7	0.68	5.3	Phage integrase;phage terminase large subunit;DNA N-6-adenine-methyltransferase of bacteriophage;Phage protein;conserved hypothetical protein related to phage;putative phage related transcriptional regulator;Phage antirepressor protein;Phage/plasmid primase P4, C-terminal;Phage integrase family protein;Abortive infection bacteriophage resistance protein;Hypothetical protein, Lmo2313 homolog [Bacteriophage A118];Phage transcriptional repressor;Mu-like prophage FluMu protein gp29;Phage major tail protein phi13;Phage (Mu-like) virion morphogenesis protein
Retron-type RNA-directed DNA polymerase (EC 2.7.7.49)	22	5.56	1.47	4.36	11	2.81	0.69	4.43	11	3.02	0.87	4.22	Retron-type RNA-directed DNA polymerase (EC 2.7.7.49)
excisionase	16	5.88	1.09	3.96	9	2.59	0.27	4.01	7	3.24	0.57	4.14	excisionase;Excisionase;putative excisionase
plasmid	15	5.12	3.21	4.23	6	2.49	1.31	4.38	9	2.37	1.96	4.43	Chromosome (plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj;Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J;Chromosome (plasmid) partitioning protein ParB;Chromosome (plasmid) partitioning protein ParA;plasmid recombination enzyme
recombinase	14	10.1	2.13	8.05	9	4.74	1.0	8.23	5	5.59	1.31	7.07	Site-specific recombinase;Site-specific tyrosine recombinase;Recombinase;Tyrosine type site-specific recombinase
kinase	13	15.11	23.64	17.24	7	6.66	10.5	17.14	6	7.18	12.07	17.37	Tyrosine-protein kinase Wzc (EC 2.7.10.2);putative ribose phosphate pyrophosphokinase;Two-component system sensor histidine kinase;6-phosphofructokinase (EC 2.7.1.11);putative two-component system sensor protein histidine kinase
ABC transporter	12	6.76	15.91	11.31	5	3.62	7.51	10.74	7	3.11	7.65	11.04	Fe3+ ABC transporter, ATP-binding protein;Fe3+ ABC transporter, periplasmic iron-binding protein;ABC transporter, ATP-binding protein;Vitamin B12 ABC transporter, permease component BtuC;putative ABC oligo/dipeptide transport, ATP-binding protein;Vitamin B12 ABC transporter, ATPase component BtuD
phosphatase	11	5.65	3.15	3.91	5	2.36	1.32	3.96	6	3.53	1.98	4.03	Exopolyphosphatase (EC 3.6.1.11);Protein tyrosine phosphatase (EC 3.1.3.48);endonuclease/exonuclease/phosphatase family precursor (38.1 kD) (5F605);Phosphoglycolate phosphatase;ADP-ribose pyrophosphatase;Ser/Thr protein phosphatase family protein
Lysozyme-related protein	10	2.27	0.87	2.79	4	1.13	0.36	2.8	6	1.24	0.46	2.61	Lysozyme-related protein
Putative DNA methylase	10	4.96	1.15	5.01	7	2.22	0.41	4.98	3	2.05	0.68	4.8	Putative DNA methylase
hydrolase	10	5.06	5.99	4.68	4	2.61	2.26	4.22	6	2.67	3.07	4.84	Putative secreted glycosyl hydrolase;Phosphohydrolase (MutT/nudix family protein);HD superfamily hydrolase;Dienelactone hydrolase and related enzymes;Putative hydrolase;Haloacid dehalogenase-like hydrolase
topoisomerase	10	4.01	2.34	5.14	5	1.99	0.76	5.44	5	2.38	1.36	4.74	DNA topoisomerase III domain;DNA topoisomerase III, Bacteroidales-type (EC 5.99.1.2);DNA topoisomerase III (EC 5.99.1.2)
TonB-dependent receptor	8	59.49	41.17	36.88	3	30.55	18.94	37.36	5	31.17	22.79	36.52	TonB-dependent receptor
helicase	8	6.74	7.42	6.46	4	2.83	2.92	5.97	4	3.96	3.91	6.68	COG0553: Superfamily II DNA/RNA helicases, SNF2 family;DEDDh exonuclease domain / RecQ helicase domain / UvrD/RecB-like domain;Helicase;helicase domain-containing protein;DNA helicase IV;RecD-like DNA helicase Atu2026;Putative helicase;CRISPR-associated helicase Cas3
toxin	7	2.48	0.85	1.3	3	1.23	0.46	1.27	4	1.25	0.52	1.25	Addiction module toxin, Txe/YoeB;Zeta toxin;Epsilon antitoxin;Death on curing protein, Doc toxin;Antitoxin HigA
replication	6	1.17	0.25	0.57	3	0.54	0.11	0.64	3	0.5	0.08	0.56	Replication protein;putative replication protein;Replication initiation protein A
reductase	6	8.73	8.48	7.62	1	3.91	3.84	7.3	5	5.32	4.01	7.69	Nitroreductase family protein;Putative reductase;3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100);Oxidoreductase, aldo/keto reductase family;Dihydrofolate reductase (EC 1.5.1.3);Arsenate reductase (EC 1.20.4.1)
Large exoproteins involved in heme utilization or adhesion	6	0.77	0.24	0.53	4	0.32	0.03	0.5	2	0.28	0.22	0.61	Large exoproteins involved in heme utilization or adhesion
dehydrogenase	6	9.0	4.49	5.45	3	3.74	1.52	4.98	3	5.08	2.17	5.66	Dihydroorotate dehydrogenase (NAD(+)), catalytic subunit (EC 1.3.1.14);UDP-N-acetyl-D-mannosamine dehydrogenase (EC 1.1.1.336);UDP-glucose 6-dehydrogenase (EC 1.1.1.22)
resistance	5	0.93	1.34	1.36	2	0.33	0.47	1.1	3	0.53	0.47	1.38	Ribosome protection-type tetracycline resistance related proteins;Tellurium resistance protein TerD;Tellurium resistance protein;Multiple antibiotic resistance protein marC
N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	5	1.89	2.05	2.24	3	0.93	0.93	2.21	2	0.84	0.98	1.91	N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)
cell wall	5	0.96	0.79	0.72	3	0.4	0.29	0.74	2	0.28	0.42	0.69	Cell wall endopeptidase, family M23/M37;putative cell wall biogenesis protein
HIPA PROTEIN	4	3.1	1.07	1.79	2	1.29	0.47	1.96	2	1.58	0.52	1.92	HIPA PROTEIN
transcription	4	4.71	4.06	3.84	2	1.7	1.56	3.62	2	2.85	1.92	3.66	Capsular polysaccharide transcription antitermination protein, UpxY family;Transcription antitermination protein UpdY
Beta-lactamase (EC 3.5.2.6)	3	0.63	0.58	0.82	1	0.27	0.22	0.69	2	0.26	0.38	0.86	Beta-lactamase (EC 3.5.2.6)
Glutamine synthetase type III, GlnN (EC 6.3.1.2)	3	0.57	1.52	0.77	1	0.25	0.68	0.91	2	0.17	0.74	0.77	Glutamine synthetase type III, GlnN (EC 6.3.1.2)
drug	3	1.25	4.36	3.13	1	0.44	2.07	3.15	2	0.81	2.01	2.81	BexA, multidrug efflux pump;Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps
UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)	3	3.7	1.28	2.38	2	1.54	0.72	2.21	1	2.07	0.69	2.26	UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)
ferritin A	2	0.11	0.12	0.23	1	0.05	0.05	0.19	1	0.05	0.04	0.19	ferritin A
Putative anti-sigma factor	2	14.18	12.25	8.56	1	6.35	5.57	8.75	1	7.88	6.87	8.84	Putative anti-sigma factor
Alpha-galactosidase (EC 3.2.1.22)	2	2.37	1.8	1.46	1	0.99	0.95	1.49	1	1.13	1.01	1.35	Alpha-galactosidase (EC 3.2.1.22)
Basic proline-rich protein	2	0.28	0.02	0.38	1	0.1	0.0	0.46	1	0.16	0.02	0.57	Basic proline-rich protein
putative hemagglutinin	2	0.83	0.11	0.86	2	0.48	0.02	1.12	0	0.32	0.04	1.04	putative hemagglutinin
CiaB PROTEIN	2	0.33	0.06	0.13	1	0.18	0.05	0.21	1	0.12	0.0	0.15	CiaB PROTEIN
Ferric siderophore transport system, periplasmic binding protein TonB	2	0.73	2.46	1.72	1	0.36	1.3	1.77	1	0.18	1.23	1.49	Ferric siderophore transport system, periplasmic binding protein TonB
DNA mismatch repair protein MutS	2	1.06	0.97	1.04	1	0.3	0.43	0.87	1	0.48	0.5	1.1	DNA mismatch repair protein MutS
LtrC-like protein	2	0.71	0.31	0.4	0	0.29	0.06	0.37	2	0.33	0.19	0.35	LtrC-like protein
ClpB protein	2	0.78	1.32	0.97	1	0.31	0.54	0.91	1	0.3	0.5	0.78	ClpB protein
Capsular polysaccharide synthesis enzyme Cap5F	2	1.46	0.32	0.59	0	0.61	0.1	0.56	2	0.89	0.13	0.56	Capsular polysaccharide synthesis enzyme Cap5F
DNA repair protein RadC	2	1.08	1.02	1.15	1	0.48	0.53	1.04	1	0.63	0.57	1.16	DNA repair protein RadC
Abi-like protein	2	0.26	0.19	0.24	1	0.08	0.02	0.14	1	0.22	0.14	0.12	Abi-like protein
VgrG protein	2	0.83	0.33	0.68	2	0.57	0.11	0.65	0	0.54	0.27	0.75	VgrG protein
putative lipoprotein	2	3.77	3.16	3.12	1	1.85	1.62	2.52	1	2.05	1.54	2.7	putative lipoprotein
FIG007317: Chromosome segregation protein SMC-like	2	0.41	0.13	0.13	2	0.18	0.07	0.24	0	0.13	0.01	0.2	FIG007317: Chromosome segregation protein SMC-like
Maebl	2	1.09	0.26	0.68	0	0.46	0.04	0.85	2	0.65	0.23	0.78	Maebl
UDP-N-acetyl-L-fucosamine synthase (EC 5.1.3.28)	2	2.02	0.23	0.86	0	1.03	0.15	0.82	2	1.08	0.22	0.83	UDP-N-acetyl-L-fucosamine synthase (EC 5.1.3.28)
MunI-like protein	2	0.1	0	0.1	2	0.06	0	0.02	0	0.02	0	0.05	MunI-like protein
Protease HtpX homolog	2	0.19	0.01	0.23	2	0.12	0.0	0.19	0	0.11	0.0	0.15	Protease HtpX homolog
Toprim domain protein	2	0.55	0.05	0.47	0	0.23	0.0	0.39	2	0.23	0.04	0.5	Toprim domain protein
Thymidylate synthase (EC 2.1.1.45)	2	1.0	1.11	0.8	1	0.54	0.53	0.99	1	0.74	0.59	0.75	Thymidylate synthase (EC 2.1.1.45)
putative surface layer protein	2	0.67	0.44	0.54	1	0.17	0.12	0.36	1	0.32	0.26	0.31	putative surface layer protein
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	2	0.5	1.02	0.97	1	0.28	0.33	0.74	1	0.2	0.69	0.75	Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
GDP-L-fucose synthetase (EC 1.1.1.271)	2	1.97	1.11	1.08	1	0.6	0.62	1.02	1	1.27	0.66	1.23	GDP-L-fucose synthetase (EC 1.1.1.271)
RNA polymerase ECF-type sigma factor	2	14.79	21.32	14.36	1	6.87	10.39	14.15	1	8.15	11.36	14.9	RNA polymerase ECF-type sigma factor
putative cell surface protein	2	2.03	0.9	1.37	1	0.91	0.56	1.31	1	1.37	0.64	1.34	putative cell surface protein
BRO domain protein domain protein	1	0.01	0.01	0	0	0.0	0.0	0	1	0.0	0.0	0	BRO domain protein domain protein
putative protein Ymh	1	0.06	0.03	0.02	0	0.02	0.0	0.01	1	0.01	0.01	0.03	putative protein Ymh
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	1	0.09	1.17	0.58	1	0.12	0.74	0.75	0	0.08	0.58	0.54	D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)
TIR domain protein	1	0.06	0.01	0.02	0	0.01	0.0	0.0	1	0.05	0.03	0.01	TIR domain protein
stress protein	1	0	0.01	0.03	0	0	0.0	0.03	1	0	0.02	0.02	stress protein
putative exported protein	1	0.66	0.42	0.49	0	0.4	0.26	0.47	1	0.32	0.19	0.55	putative exported protein
Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA	1	0.07	0.24	0.76	1	0.05	0.17	0.61	0	0.07	0.07	0.56	Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA
Piwi domain protein	1	0.22	0	0.09	1	0.12	0	0.1	0	0.16	0	0.06	Piwi domain protein
Uridine phosphorylase (EC 2.4.2.3)	1	0.14	0.11	0.18	0	0.08	0.03	0.14	1	0.03	0.02	0.2	Uridine phosphorylase (EC 2.4.2.3)
protein of unknown function DUF1016	1	0.28	0.05	0.29	1	0.1	0.0	0.3	0	0.14	0.01	0.23	protein of unknown function DUF1016
Maltodextrin glucosidase (EC 3.2.1.20)	1	0.81	1.03	1.05	1	0.36	0.47	1.05	0	0.27	0.41	1.12	Maltodextrin glucosidase (EC 3.2.1.20)
Putative monooxygenase	1	0.22	0	0.09	0	0.09	0	0.12	1	0.1	0	0.1	Putative monooxygenase
Immunoreactive 53 kDa antigen PG123	1	2.91	2.83	2.78	0	1.24	1.32	2.63	1	1.68	1.73	2.79	Immunoreactive 53 kDa antigen PG123
Protein of unknown function DUF86, BT0167 group	1	0.59	0.35	0.35	0	0.24	0.12	0.36	1	0.31	0.16	0.39	Protein of unknown function DUF86, BT0167 group
Ferritin-like protein 2	1	0.32	0.87	0.67	0	0.11	0.3	0.71	1	0.1	0.6	0.63	Ferritin-like protein 2
flavodoxin	1	0.31	0.15	0.26	0	0.15	0.06	0.2	1	0.21	0.09	0.22	flavodoxin
tankyrase, TRF1-interacting ankyrin-related ADP- ribose polymerase	1	0.26	0.1	0.16	1	0.22	0.07	0.16	0	0.07	0.08	0.13	tankyrase, TRF1-interacting ankyrin-related ADP- ribose polymerase
zinc metalloproteinase Mpr protein	1	0.22	0.02	0.14	1	0.05	0.0	0.19	0	0.12	0.0	0.2	zinc metalloproteinase Mpr protein
predicted protein	1	0.25	0.03	0.28	0	0.05	0.0	0.32	1	0.21	0.04	0.31	predicted protein
BexA	1	0.39	0.42	0.56	1	0.09	0.13	0.68	0	0.1	0.24	0.74	BexA
HipA N-terminal domain protein	1	0.06	0.06	0.03	0	0.04	0.02	0.01	1	0.0	0.03	0.01	HipA N-terminal domain protein
Adenine-specific DNA methylase containing a Zn-ribbon	1	0.06	0	0.04	1	0.03	0	0.06	0	0.0	0	0.02	Adenine-specific DNA methylase containing a Zn-ribbon
Signal peptide peptidase SppA (protease 4)	1	0.09	0.98	0.48	1	0.05	0.39	0.48	0	0.01	0.46	0.54	Signal peptide peptidase SppA (protease 4)
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	1	1.71	4.28	2.62	0	0.76	2.13	2.9	1	1.16	2.47	3.14	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Protein of unknown function DUF541	1	0.35	0.27	0.37	0	0.1	0.05	0.21	1	0.15	0.22	0.26	Protein of unknown function DUF541
POTASSIUM/PROTON ANTIPORTER ROSB	1	0.48	1.31	0.82	0	0.23	0.51	0.96	1	0.09	0.71	0.71	POTASSIUM/PROTON ANTIPORTER ROSB
DNA-binding protein HU	1	1.7	0.8	1.42	1	0.74	0.38	1.25	0	0.81	0.33	1.15	DNA-binding protein HU
Ribonuclease HII (EC 3.1.26.4)	1	0.04	1.0	0.54	0	0.01	0.54	0.56	1	0.03	0.58	0.45	Ribonuclease HII (EC 3.1.26.4)
Alpha-L-fucosidase (EC 3.2.1.51)	1	2.01	2.68	1.99	0	1.02	1.23	1.98	1	0.95	1.63	1.99	Alpha-L-fucosidase (EC 3.2.1.51)
AAA+ superfamily protein	1	0.48	0.01	0.13	1	0.14	0.0	0.06	0	0.23	0.0	0.06	AAA+ superfamily protein
Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21)	1	0.22	0.1	0.14	0	0.13	0.04	0.15	1	0.02	0.02	0.2	Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21)
Patatin-like protein	1	0.5	0.28	0.26	1	0.32	0.22	0.23	0	0.17	0.07	0.18	Patatin-like protein
Putative peptidase	1	0.26	1.16	0.64	1	0.11	0.49	0.7	0	0.05	0.6	0.68	Putative peptidase
UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.135)	1	3.53	1.28	2.16	0	1.88	0.61	1.99	1	1.92	0.8	2.08	UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.135)
Conserved domain protein	1	2.6	5.35	3.74	0	1.33	2.65	3.45	1	1.06	2.53	3.61	Conserved domain protein
ThiF family protein, ubiquitin-activating enzyme	1	1.95	0.52	1.12	0	0.88	0.08	1.22	1	1.09	0.51	1.14	ThiF family protein, ubiquitin-activating enzyme
O-antigen flippase Wzx	1	2.02	0.49	1.02	0	0.9	0.3	1.15	1	0.76	0.33	0.96	O-antigen flippase Wzx
Endonuclease	1	0.51	0.59	0.48	0	0.19	0.32	0.46	1	0.36	0.27	0.39	Endonuclease
Fic family protein	1	0.62	0.63	0.65	0	0.38	0.41	0.62	1	0.27	0.37	0.5	Fic family protein
TrsE-like protein	1	0.04	0.05	0.06	1	0.02	0.03	0.07	0	0.01	0.02	0.06	TrsE-like protein
Integration host factor alpha/beta	1	0.33	0.62	0.48	1	0.2	0.32	0.42	0	0.18	0.23	0.48	Integration host factor alpha/beta
protein containing tetratricopeptide repeat	1	0.03	0	0.01	0	0.03	0	0.02	1	0.01	0	0.04	protein containing tetratricopeptide repeat
Mll4708 protein	1	0.52	0.18	0.28	1	0.25	0.01	0.25	0	0.34	0.07	0.3	Mll4708 protein
putative resolvase	1	0.39	0.15	0.16	0	0.07	0.0	0.28	1	0.36	0.13	0.22	putative resolvase
Arginase (EC 3.5.3.1)	1	0.32	0.55	0.47	1	0.23	0.13	0.44	0	0.12	0.28	0.34	Arginase (EC 3.5.3.1)
ThiJ/PfpI family protein	1	0.54	0.35	0.29	0	0.17	0.1	0.25	1	0.26	0.16	0.24	ThiJ/PfpI family protein
Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	1	0.02	0.13	0.08	1	0.0	0.03	0.06	0	0.0	0.04	0.04	Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
M. jannaschii predicted coding region MJ0455	1	0	0.16	0.1	1	0	0.09	0.11	0	0	0.04	0.05	M. jannaschii predicted coding region MJ0455
Cardiolipin synthetase (EC 2.7.8.-)	1	0.11	1.61	0.61	1	0.05	0.7	0.63	0	0.04	0.67	0.87	Cardiolipin synthetase (EC 2.7.8.-)
Cell surface protein	1	0.76	0.33	0.38	0	0.29	0.13	0.33	1	0.36	0.14	0.3	Cell surface protein
TnpY	1	0.02	0	0.05	1	0.0	0	0.04	0	0.05	0	0.04	TnpY
SECRETION ACTIVATOR PROTEIN	1	0.52	0.13	0.22	1	0.29	0.06	0.33	0	0.27	0.08	0.33	SECRETION ACTIVATOR PROTEIN
unknown	1	0.19	0.07	0.1	0	0.17	0.0	0.08	1	0.08	0.03	0.1	unknown
N-acetylglucosamine related transporter, NagX	1	0.57	1.9	1.12	0	0.06	0.81	0.97	1	0.46	1.09	0.98	N-acetylglucosamine related transporter, NagX
Tn5252, Orf23	1	0.11	0.06	0.08	1	0.01	0.01	0.1	0	0.03	0.0	0.07	Tn5252, Orf23
"Isochorismatase "	1	0.06	0.08	0.07	0	0.01	0.0	0.05	1	0.02	0.06	0.06	"Isochorismatase "
putative flippase	1	2.94	0.46	1.72	1	1.08	0.22	1.5	0	1.81	0.38	1.6	putative flippase
GDP-mannose 4,6-dehydratase (EC 4.2.1.47)	1	1.76	0.96	1.32	0	0.71	0.48	1.51	1	1.48	0.54	1.21	GDP-mannose 4,6-dehydratase (EC 4.2.1.47)
5S RNA	1	0.09	0.19	0.4	1	0.04	0.09	0.34	0	0.1	0.0	0.46	5S RNA
Macrolide-efflux protein	1	0.18	0.13	0.21	1	0.1	0.1	0.22	0	0.04	0.12	0.14	Macrolide-efflux protein
p5482_14	1	0.42	0.08	0.19	1	0.26	0.04	0.25	0	0.15	0.04	0.15	p5482_14
Radical SAM domain protein	1	0.93	0.73	1.16	1	0.57	0.29	1.06	0	0.36	0.34	1.22	Radical SAM domain protein
CRISPR-associated protein, Csd1 family	1	1.56	0.29	0.2	0	0.58	0.07	0.23	1	0.98	0.32	0.18	CRISPR-associated protein, Csd1 family
Putative DNA-binding protein	1	0.59	1.48	0.75	0	0.29	0.9	0.7	1	0.14	0.81	0.85	Putative DNA-binding protein
Tryptophan synthase (indole-salvaging) (EC 4.2.1.122)	1	0.48	1.46	0.95	0	0.19	0.64	0.6	1	0.2	0.83	0.77	Tryptophan synthase (indole-salvaging) (EC 4.2.1.122)
N-acetylmuramoyl alanine amidase	1	0.87	0.17	0.56	1	0.41	0.11	0.43	0	0.66	0.09	0.53	N-acetylmuramoyl alanine amidase
Phosphoglycerate mutase (EC 5.4.2.11)	1	0.32	0.88	0.74	0	0.19	0.53	0.63	1	0.11	0.48	0.64	Phosphoglycerate mutase (EC 5.4.2.11)
DNA-binding protein HBsu	1	0.06	0.03	0.11	1	0.06	0.03	0.1	0	0.01	0.01	0.05	DNA-binding protein HBsu
putative monooxygenase	1	0.03	0.03	0.01	1	0.01	0.01	0.05	0	0.0	0.02	0.0	putative monooxygenase
Uncharacterized conserved protein, YQXD B.subtilis ortholog	1	0	0.06	0.03	0	0	0.04	0.03	1	0	0.02	0.04	Uncharacterized conserved protein, YQXD B.subtilis ortholog
protein of unknown function DUF262	1	0.13	0.14	0.11	0	0.09	0.01	0.13	1	0.12	0.07	0.16	protein of unknown function DUF262
MTH1175-like domain family protein	1	0.5	0.08	0.19	0	0.24	0.07	0.12	1	0.34	0.05	0.14	MTH1175-like domain family protein
Subtilisin-like serine proteases	1	0.4	0.77	0.37	0	0.16	0.34	0.35	1	0.21	0.53	0.31	Subtilisin-like serine proteases
Insertion element IS2 uncharacterized 16.4 kDa protein (ORF4)	1	0	0	0.05	1	0	0	0.06	0	0	0	0.1	Insertion element IS2 uncharacterized 16.4 kDa protein (ORF4)
capsular polysaccharide biosynthesis protein Cps4G	1	0.19	0.05	0.03	0	0.07	0.01	0.01	1	0.11	0.04	0.0	capsular polysaccharide biosynthesis protein Cps4G
"Pyrrolidone-carboxylate peptidase "	1	0	0	0.02	1	0	0	0.01	0	0	0	0.01	"Pyrrolidone-carboxylate peptidase "
conserved domain protein	1	1.06	0.4	0.67	1	0.51	0.24	0.76	0	0.39	0.14	0.83	conserved domain protein
putative DNA methylase	1	0.6	0.04	0.42	1	0.32	0.05	0.21	0	0.3	0.01	0.36	putative DNA methylase
DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	1	0.43	0.84	0.64	1	0.21	0.44	0.57	0	0.32	0.48	0.66	DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)
Slr1117 protein	1	0.11	0.23	0.17	1	0.1	0.07	0.1	0	0.06	0.09	0.22	Slr1117 protein
Beta-galactosidase (EC 3.2.1.23)	1	9.89	13.26	9.01	1	4.85	6.67	8.91	0	5.33	6.38	9.16	Beta-galactosidase (EC 3.2.1.23)
putative secreted protein	1	0.69	1.0	0.71	1	0.56	0.46	0.5	0	0.3	0.47	0.73	putative secreted protein
TraE-like protein	1	0.09	0.03	0.05	0	0.07	0.0	0.05	1	0.05	0.03	0.02	TraE-like protein
Capsular polysaccharide biosynthesis protein capD	1	0.27	0.43	0.2	0	0.09	0.16	0.14	1	0.08	0.12	0.19	Capsular polysaccharide biosynthesis protein capD
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	1	0.18	1.48	0.82	1	0.07	0.64	0.7	0	0.12	0.75	0.71	8-amino-7-oxononanoate synthase (EC 2.3.1.47)
RNA polymerase sigma-54 factor RpoN	1	0.19	1.36	0.69	1	0.09	0.55	0.5	0	0.04	0.6	0.55	RNA polymerase sigma-54 factor RpoN
Modification methylase NlaIII (EC 2.1.1.72)	1	0.35	0.02	0.1	1	0.21	0.0	0.08	0	0.25	0.01	0.08	Modification methylase NlaIII (EC 2.1.1.72)
Flavodoxin domain protein	1	0.21	0.16	0.03	0	0.0	0.0	0.08	1	0.06	0.1	0.13	Flavodoxin domain protein
Glycogen phosphorylase (EC 2.4.1.1)	1	0.23	1.08	0.73	0	0.1	0.53	0.67	1	0.09	0.5	0.78	Glycogen phosphorylase (EC 2.4.1.1)
protein of unknown function DUF124	1	0.04	0	0.01	0	0.01	0	0.04	1	0.0	0	0.03	protein of unknown function DUF124
RNA methylase	1	0.35	0.16	0.21	1	0.14	0.0	0.14	0	0.21	0.09	0.24	RNA methylase
Patatin	1	0.04	0.15	0.06	0	0.02	0.0	0.08	1	0.04	0.1	0.08	Patatin
Methylglyoxal synthase (EC 4.2.3.3)	1	0.15	0.94	0.8	0	0.07	0.36	0.65	1	0.09	0.65	0.61	Methylglyoxal synthase (EC 4.2.3.3)
CRISPR-associated protein, Csd2/Csh2 family	1	0.47	0.18	0.14	0	0.05	0.07	0.16	1	0.37	0.09	0.12	CRISPR-associated protein, Csd2/Csh2 family
TraF	1	0.01	0	0.01	1	0.0	0	0.03	0	0.0	0	0.04	TraF
metallo-beta-lactamase domain protein	1	0.19	0.09	0.12	0	0.12	0.1	0.12	1	0.17	0.1	0.09	metallo-beta-lactamase domain protein
MbpA	1	0.05	0.04	0.09	0	0.02	0.0	0.03	1	0.0	0.03	0.06	MbpA