# The genome of the tardigrade Hypsibius dujardini
# Georgios Koutsovoulos1, Sujai Kumar1, Dominik Laetsch1, Jennifer Daub1, Claire Conlon1, Habib Maroon1, Fran Thomas1, Lewis Stevens1, Aziz Aboobaker2 and Mark Blaxter1*
# 1	Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3FL, UK
# 2	Department of Zoology, University of Oxford, South Parks Road, Oxford OX, UK.

# Supplemental file 5
# blobtools summary stats file, describing the taxonomic groups (at phylum rank) detected in the nHd.2.3.abv500 assembly
# blobtools was run with taxrule (-x) bestsumorder
# the columns include instructions for plotting, including:
#	colour indicates the colour the points was plotted with;
#	span indicates the span of contigs or scaffolds assigned to the group;
#	visible indicates the proportion of this set of points visible in the plot;
#	[read map and readmap% are zero in all rows because coverage was parsed from a CLC .cov file]

# nHd.2.3.abv500.span.phylum.p7.100.bestsumorder - cov0
Group	colour	count	visible (%)	span	visible(%)	n50	GC	GC (std)	cov_mean	cov_std	read map	read map (%)
all	None	13,202	100.0%	134,961,902	100.0%	50,531	0.44	0.048	67.3	183.8	0	0.0%
Arthropoda	#9e0142	2,125	100.0%	54,932,029	100.0%	66,681	0.45	0.036	81.1	71.8	0	0.0%
Chordata	#e2514a	2,120	100.0%	39,344,955	100.0%	51,162	0.46	0.036	78.4	156.0	0	0.0%
no-hit	#d3d3d3	7,177	100.0%	11,231,258	100.0%	1,987	0.43	0.051	55.0	116.5	0	0.0%
Mollusca	#fee999	233	100.0%	5,563,466	100.0%	65,454	0.45	0.04	72.1	26.3	0	0.0%
Nematoda	#edf8a3	246	100.0%	4,950,404	100.0%	59,807	0.45	0.035	69.6	35.9	0	0.0%
Proteobacteria	#a2d9a4	148	100.0%	2,163,143	100.0%	49,447	0.48	0.07	84.6	80.7	0	0.0%
Annelida	#47a0b3	100	100.0%	2,126,433	100.0%	46,201	0.45	0.044	73.3	31.0	0	0.0%
other	#ffffff	1,053	100.0%	14,650,214	100.0%	39,239	0.46	0.046	96.1	517.2	0	0.0%
Bacteroidetes	None	140	100.0%	2,029,840	100.0%	28,343	0.47	0.038	51.1	50.2	0	0.0%
Ascomycota	None	73	100.0%	1,728,083	100.0%	83,072	0.46	0.04	222.9	1336.2	0	0.0%
Actinobacteria	None	25	100.0%	184,443	100.0%	24,367	0.49	0.056	73.2	38.1	0	0.0%
Echinodermata	None	73	100.0%	1,333,981	100.0%	54,682	0.45	0.04	73.3	40.6	0	0.0%
Brachiopoda	None	1	100.0%	70,381	100.0%	70,381	0.46	0.0	85.0	0.0	0	0.0%
Poribacteria	None	1	100.0%	1,249	100.0%	1,249	0.35	0.0	28.4	0.0	0	0.0%
Onychophora	None	3	100.0%	27,640	100.0%	24,308	0.44	0.0021	67.0	14.1	0	0.0%
Bacillariophyta	None	10	100.0%	40,643	100.0%	24,915	0.48	0.066	70.7	29.9	0	0.0%
Streptophyta	None	86	100.0%	1,301,754	100.0%	37,268	0.45	0.031	77.1	77.8	0	0.0%
Porifera	None	49	100.0%	604,757	100.0%	31,840	0.45	0.047	80.0	71.9	0	0.0%
Phaeophyceae	None	1	100.0%	4,652	100.0%	4,652	0.46	0.0	51.6	0.0	0	0.0%
Apicomplexa	None	57	100.0%	317,870	100.0%	18,170	0.45	0.047	63.4	25.3	0	0.0%
Cryptomycota	None	1	100.0%	4,084	100.0%	4,084	0.43	0.0	75.6	0.0	0	0.0%
Chytridiomycota	None	3	100.0%	25,291	100.0%	23,555	0.44	0.034	44.6	6.7	0	0.0%
Rotifera	None	1	100.0%	115,760	100.0%	115,760	0.43	0.0	73.9	0.0	0	0.0%
Hemichordata	None	61	100.0%	1,270,912	100.0%	51,040	0.45	0.039	65.8	24.3	0	0.0%
Viruses-undef	None	4	100.0%	44,869	100.0%	17,399	0.45	0.059	71.6	29.6	0	0.0%
Glomeromycota	None	12	100.0%	219,287	100.0%	55,143	0.44	0.019	59.4	18.2	0	0.0%
Acidobacteria	None	2	100.0%	6,040	100.0%	5,252	0.48	0.035	86.0	51.4	0	0.0%
Eukaryota-undef	None	151	100.0%	1,745,324	100.0%	28,067	0.46	0.049	130.2	826.4	0	0.0%
Spirochaetes	None	2	100.0%	9,062	100.0%	8,530	0.52	0.13	66.7	29.8	0	0.0%
Candidatus Saccharibacteria	None	2	100.0%	17,259	100.0%	15,258	0.45	0.014	38.1	3.5	0	0.0%
Firmicutes	None	32	100.0%	213,044	100.0%	24,845	0.46	0.063	69.1	27.3	0	0.0%
Planctomycetes	None	2	100.0%	22,917	100.0%	22,367	0.41	0.011	49.6	1.6	0	0.0%
Basidiomycota	None	46	100.0%	767,155	100.0%	71,391	0.46	0.032	71.8	44.4	0	0.0%
Platyhelminthes	None	38	100.0%	631,564	100.0%	56,363	0.45	0.038	248.1	1055.3	0	0.0%
Chlamydiae	None	2	100.0%	15,000	100.0%	8,780	0.41	0.052	44.4	12.6	0	0.0%
Chlorobi	None	1	100.0%	5,491	100.0%	5,491	0.43	0.0	58.7	0.0	0	0.0%
Microsporidia	None	4	100.0%	56,588	100.0%	30,811	0.43	0.013	67.6	22.5	0	0.0%
Placozoa	None	7	100.0%	12,394	100.0%	2,885	0.43	0.027	44.8	5.6	0	0.0%
Tardigrada	None	12	100.0%	469,593	100.0%	251,965	0.42	0.065	228.4	249.0	0	0.0%
Cyanobacteria	None	12	100.0%	126,992	100.0%	26,825	0.49	0.054	63.6	23.0	0	0.0%
Thermotogae	None	1	100.0%	14,239	100.0%	14,239	0.43	0.0	56.7	0.0	0	0.0%
Chlorophyta	None	15	100.0%	123,913	100.0%	30,686	0.46	0.072	56.0	21.2	0	0.0%
Cnidaria	None	120	100.0%	1,080,958	100.0%	19,585	0.44	0.047	80.9	65.8	0	0.0%
Euryarchaeota	None	3	100.0%	7,185	100.0%	4,852	0.5	0.042	50.1	18.5	0	0.0%