# The genome of the tardigrade Hypsibius dujardini
# Georgios Koutsovoulos1, Sujai Kumar1, Dominik Laetsch1, Jennifer Daub1, Claire Conlon1, Habib Maroon1, Fran Thomas1, Lewis Stevens1, Aziz Aboobaker2 and Mark Blaxter1*
# 1	Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3FL, UK
# 2	Department of Zoology, University of Oxford, South Parks Road, Oxford OX, UK.

# Supplemental file 2

# Scaffolds identified as contamination from kinetoplastid protozoan (Bodonidae)

nHd.2.3.scaf02538
nHd.2.3.scaf03243
nHd.2.3.scaf08307

# Scaffolds from nHd.2.3 with less than coverage 10 based on all raw reads mapped from UNC 
# short insert libraries

nHd.2.3.scaf01767
nHd.2.3.scaf01856
nHd.2.3.scaf02249
nHd.2.3.scaf02325
nHd.2.3.scaf02357
nHd.2.3.scaf02457
nHd.2.3.scaf02513
nHd.2.3.scaf02582
nHd.2.3.scaf02587
nHd.2.3.scaf02849
nHd.2.3.scaf03025
nHd.2.3.scaf03027
nHd.2.3.scaf03202
nHd.2.3.scaf03245
nHd.2.3.scaf03410
nHd.2.3.scaf03513
nHd.2.3.scaf03522
nHd.2.3.scaf03725
nHd.2.3.scaf03742
nHd.2.3.scaf03891
nHd.2.3.scaf03940
nHd.2.3.scaf04020
nHd.2.3.scaf04100
nHd.2.3.scaf04169
nHd.2.3.scaf04483
nHd.2.3.scaf04539
nHd.2.3.scaf04758
nHd.2.3.scaf04792
nHd.2.3.scaf05359
nHd.2.3.scaf05617
nHd.2.3.scaf05775
nHd.2.3.scaf05784
nHd.2.3.scaf06097
nHd.2.3.scaf06198
nHd.2.3.scaf06215
nHd.2.3.scaf06415
nHd.2.3.scaf06496
nHd.2.3.scaf06678
nHd.2.3.scaf06799
nHd.2.3.scaf06901
nHd.2.3.scaf08689
nHd.2.3.scaf10229
nHd.2.3.scaf11247
nHd.2.3.scaf12727
nHd.2.3.scaf12972
nHd.2.3.scaf13009
nHd.2.3.scaf13010
nHd.2.3.scaf13109