Skip to main content

One-Pot Simple Methodology for Cassette Randomization and Recombination for Focused Directed Evolution (OSCARR)

  • Protocol
  • First Online:
Directed Evolution Library Creation

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1179))

Abstract

The OSCARR methodology (One-pot Simple methodology for CAssette Randomization and Recombination) bridges the gap between site-directed mutagenesis and full randomization by making use of carefully designed mutagenic cassettes and an optimized one-pot megaprimer PCR. The method is especially suited to construct libraries of up to ten randomized codons for focused directed evolution, exhibits up to 97 % efficiency in the amplification of mutated over wild-type products, and is sufficiently versatile to allow mutagenesis and recombination of several cassettes within the same gene.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Morley KL, Kazlauskas RJ (2005) Improving enzyme properties: when are closer mutations better? Trends Biotechnol 23:231–237

    Article  CAS  PubMed  Google Scholar 

  2. Park S, Morley KL, Horsman GP et al (2005) Focusing mutations into the P. fluorescens esterase binding site increases enantioselectivity more effectively than distant mutations. Chem Biol 12:45–54

    Article  CAS  PubMed  Google Scholar 

  3. Bornscheuer UT, Huisman GW, Kazlauskas RJ et al (2012) Engineering the third wave of biocatalysis. Nature 485:185–194

    Article  CAS  PubMed  Google Scholar 

  4. Kelley LA, Sternberg MJE (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 4:363–371

    Article  CAS  PubMed  Google Scholar 

  5. Jiang L, Althoff EA, Clemente FR et al (2008) De novo computational design of retro-aldol enzymes. Science 319:1387–1391

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  6. Röthlisberger D, Khersonsky O, Wollacott AM et al (2008) Kemp elimination catalysts by computational enzyme design. Nature 453:190–195

    Article  PubMed  Google Scholar 

  7. Hidalgo A, Schließmann A, Molina R et al (2008) A one-pot, simple methodology for cassette randomization and recombination for focused directed evolution (OSCARR). Protein Eng Des Sel 21:567–576

    Article  CAS  PubMed  Google Scholar 

  8. Jensen LJ, Andersen KV, Svendsen A et al (1998) Scoring functions for computational algorithms applicable to the design of spiked oligonucleotides. Nucleic Acids Res 26:697–702

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  9. Urban A, Neukirchen S, Jaeger K-E (1997) A rapid and efficient method for site-directed mutagenesis using one-step overlap extension PCR. Nucleic Acids Res 25:2227–2228

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  10. Datta AK (1995) Efficient amplification using “megaprimer” by asymmetric polymerase chain reaction. Nucleic Acids Res 23:4530–4531

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  11. Ke S-H, Madison EL (2005) Rapid and efficient site-directed mutagenesis by single-tube “megaprimer” PCR method. Nucleic Acids Res 25:3371–3372

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Uwe T. Bornscheuer .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer Science+Business Media New York

About this protocol

Cite this protocol

Hidalgo, A., Schließmann, A., Bornscheuer, U.T. (2014). One-Pot Simple Methodology for Cassette Randomization and Recombination for Focused Directed Evolution (OSCARR). In: Gillam, E., Copp, J., Ackerley, D. (eds) Directed Evolution Library Creation. Methods in Molecular Biology, vol 1179. Springer, New York, NY. https://doi.org/10.1007/978-1-4939-1053-3_14

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-1053-3_14

  • Published:

  • Publisher Name: Springer, New York, NY

  • Print ISBN: 978-1-4939-1052-6

  • Online ISBN: 978-1-4939-1053-3

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics