Skip to main content

Chromosomal DNA Replication in a Soluble Cell-Free System Derived From Xenopus Eggs

  • Protocol

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 322))

Abstract

Cytoplasmic egg extracts from the frog Xenopus laevis represent a powerful cell-free system to study eukaryotic chromosomal DNA replication. In the classical approach, sperm chromatin is added to unfractionated egg cytoplasm, leading to the assembly of transport-competent nuclei that undergo a single, complete round of DNA replication. The need for nuclei in this system has been circumvented. Sperm chromatin or plasmid DNA is first incubated with clarified egg cytoplasm to form chromatin-bound prereplication complexes. Subsequently, a highly concentrated nucleoplasmic extract is added that stimulates initiation from these prereplication complexes, and a single complete round of chromosomal DNA replication ensues. This review describes the preparation of the cytosolic and nucleoplasmic extracts, as well as their use in DNA replication, origin unwinding, and chromatin isolation assays.

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   169.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Blow, J. J. and Laskey, R. A. (1986) Initiation of DNA replication in nuclei and purified DNA by a cell-free extract of Xenopus eggs. Cell 47, 577–587.

    Article  CAS  PubMed  Google Scholar 

  2. Lohka, M. J. and Masui, Y. (1983) Formation in vitro of sperm pronuclei and mitotic chromosomes induced by amphibian ooplasmic components. Science 220, 719–721.

    Article  CAS  PubMed  Google Scholar 

  3. Munshi, R. and Leno, G. H. (1998) Replication of nuclei from cycling and quiescent mammalian cells in 6-DMAP-treated Xenopus egg extract. Exp. Cell Res. 240, 321–332.

    Article  CAS  PubMed  Google Scholar 

  4. Newport, J. (1987) Nuclear reconstitution in vitro: stages of assembly around protein-free DNA. Cell 48, 205–217.

    Article  CAS  PubMed  Google Scholar 

  5. Arias, E. E. and Walter, J. C. (2004) Initiation of DNA replication in Xenopus egg extracts. Front. Biosci. 9, 3025–3049.

    Article  Google Scholar 

  6. Walter, J., Sun. L., and Newport, J. (1998) Regulated chromosomal DNA replication in the absence of a nucleus. Mol. Cell 1, 519–529.

    Article  CAS  PubMed  Google Scholar 

  7. Prokhorova, T. A., Mowrer, K., Gilbert, C. H., and Walter, J. C. (2003) DNA replication of mitotic chromatin in Xenopus egg extracts. Proc. Natl. Acad. Sci. USA 100, 13,241–13,246.

    Article  CAS  PubMed  Google Scholar 

  8. Walter, J. C. (2000) Evidence for sequential action of cdc7 and cdk2 protein kinases during initiation of DNA replication in Xenopus egg extracts. J. Biol. Chem. 275, 39,773–39,778.

    Article  CAS  PubMed  Google Scholar 

  9. Wohlschlegel, J. A.. Dhar, S. K., Prokhorova, T. A., Dutta, A., and Walter, J. C. (2002) Xenopus mem 10 binds to origins of DNA replication after mcm2–7 and stimulates origin binding of cdc45. Mol. Cell 9, 233–240.

    Article  CAS  PubMed  Google Scholar 

  10. Hodgson, B., Li, A., Tada, S., and Blow, J. J. (2002) Geminin becomes activated as an inhibitor of Cdtl/RLF-B following nuclear import. Curr. Biol. 12, 678–683.

    Article  CAS  PubMed  Google Scholar 

  11. Lin, X. H., Walter, J., Scheidtmann, K., Ohst, K., Newport, J. and Walter, G. (1998) Protein phosphatase 2A is required for the initiation of chromosomal DNA replication. Proc. Natl. Acad. Sci. USA 95, 14,693–14,698.

    Article  CAS  PubMed  Google Scholar 

  12. Stokes, M. P., Van Hatten, R., Lindsay, H. D.. and Michael, W. M. (2002) DNA replication is required for the checkpoint response to damaged DNA in Xenopus egg extracts. J. Cell Biol. 158, 863–872.

    Article  CAS  PubMed  Google Scholar 

  13. Walter, J. and Newport, J. (2000) Initiation of eukaryotic DNA replication: origin unwinding and sequential chromatin association of Cdc45, RPA, and DNA polymerase α. Mol. Cell 5, 617–627.

    Article  CAS  PubMed  Google Scholar 

  14. Almouzni, G. and Wolffe, A. P. (1993) Nuclear assembly, structure, and function: the use of Xenopus in vitro systems. Exp. Cell Res. 205, 1–15.

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2006 Humana Press Inc., Totowa, NJ

About this protocol

Cite this protocol

Tutter, A.V., Walter, J.C. (2006). Chromosomal DNA Replication in a Soluble Cell-Free System Derived From Xenopus Eggs. In: Liu, X.J. (eds) Xenopus Protocols. Methods in Molecular Biology™, vol 322. Humana Press. https://doi.org/10.1007/978-1-59745-000-3_9

Download citation

  • DOI: https://doi.org/10.1007/978-1-59745-000-3_9

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-362-6

  • Online ISBN: 978-1-59745-000-3

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics