Abstract
Cytoplasmic egg extracts from the frog Xenopus laevis represent a powerful cell-free system to study eukaryotic chromosomal DNA replication. In the classical approach, sperm chromatin is added to unfractionated egg cytoplasm, leading to the assembly of transport-competent nuclei that undergo a single, complete round of DNA replication. The need for nuclei in this system has been circumvented. Sperm chromatin or plasmid DNA is first incubated with clarified egg cytoplasm to form chromatin-bound prereplication complexes. Subsequently, a highly concentrated nucleoplasmic extract is added that stimulates initiation from these prereplication complexes, and a single complete round of chromosomal DNA replication ensues. This review describes the preparation of the cytosolic and nucleoplasmic extracts, as well as their use in DNA replication, origin unwinding, and chromatin isolation assays.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Blow, J. J. and Laskey, R. A. (1986) Initiation of DNA replication in nuclei and purified DNA by a cell-free extract of Xenopus eggs. Cell 47, 577–587.
Lohka, M. J. and Masui, Y. (1983) Formation in vitro of sperm pronuclei and mitotic chromosomes induced by amphibian ooplasmic components. Science 220, 719–721.
Munshi, R. and Leno, G. H. (1998) Replication of nuclei from cycling and quiescent mammalian cells in 6-DMAP-treated Xenopus egg extract. Exp. Cell Res. 240, 321–332.
Newport, J. (1987) Nuclear reconstitution in vitro: stages of assembly around protein-free DNA. Cell 48, 205–217.
Arias, E. E. and Walter, J. C. (2004) Initiation of DNA replication in Xenopus egg extracts. Front. Biosci. 9, 3025–3049.
Walter, J., Sun. L., and Newport, J. (1998) Regulated chromosomal DNA replication in the absence of a nucleus. Mol. Cell 1, 519–529.
Prokhorova, T. A., Mowrer, K., Gilbert, C. H., and Walter, J. C. (2003) DNA replication of mitotic chromatin in Xenopus egg extracts. Proc. Natl. Acad. Sci. USA 100, 13,241–13,246.
Walter, J. C. (2000) Evidence for sequential action of cdc7 and cdk2 protein kinases during initiation of DNA replication in Xenopus egg extracts. J. Biol. Chem. 275, 39,773–39,778.
Wohlschlegel, J. A.. Dhar, S. K., Prokhorova, T. A., Dutta, A., and Walter, J. C. (2002) Xenopus mem 10 binds to origins of DNA replication after mcm2–7 and stimulates origin binding of cdc45. Mol. Cell 9, 233–240.
Hodgson, B., Li, A., Tada, S., and Blow, J. J. (2002) Geminin becomes activated as an inhibitor of Cdtl/RLF-B following nuclear import. Curr. Biol. 12, 678–683.
Lin, X. H., Walter, J., Scheidtmann, K., Ohst, K., Newport, J. and Walter, G. (1998) Protein phosphatase 2A is required for the initiation of chromosomal DNA replication. Proc. Natl. Acad. Sci. USA 95, 14,693–14,698.
Stokes, M. P., Van Hatten, R., Lindsay, H. D.. and Michael, W. M. (2002) DNA replication is required for the checkpoint response to damaged DNA in Xenopus egg extracts. J. Cell Biol. 158, 863–872.
Walter, J. and Newport, J. (2000) Initiation of eukaryotic DNA replication: origin unwinding and sequential chromatin association of Cdc45, RPA, and DNA polymerase α. Mol. Cell 5, 617–627.
Almouzni, G. and Wolffe, A. P. (1993) Nuclear assembly, structure, and function: the use of Xenopus in vitro systems. Exp. Cell Res. 205, 1–15.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2006 Humana Press Inc., Totowa, NJ
About this protocol
Cite this protocol
Tutter, A.V., Walter, J.C. (2006). Chromosomal DNA Replication in a Soluble Cell-Free System Derived From Xenopus Eggs. In: Liu, X.J. (eds) Xenopus Protocols. Methods in Molecular Biology™, vol 322. Humana Press. https://doi.org/10.1007/978-1-59745-000-3_9
Download citation
DOI: https://doi.org/10.1007/978-1-59745-000-3_9
Publisher Name: Humana Press
Print ISBN: 978-1-58829-362-6
Online ISBN: 978-1-59745-000-3
eBook Packages: Springer Protocols