Skip to main content
Log in

Nucleotide sequence of nine protein-coding genes and 22 tRNAs in the mitochondrial DNA of the sea starPisaster ochraceus

  • Published:
Journal of Molecular Evolution Aims and scope Submit manuscript

Summary

We have cloned and sequenced over 9 kb of the mitochondrial genome from the sea starPisaster ochraceus. Within a continuous 8.0-kb fragment are located the genes for NADH dehydrogenase subunits 1, 2, 3, and 4L (ND1, ND2, ND3, and ND4L), cytochrome oxidase subunits I, II, and III (COI, COII, and COIII), and adenosine triphosphatase subunits 6 and 8 (ATPase 6 and ATPase 8). This large fragment also contains a cluster of 13 tRNA genes between ND1 and COI as well as the genes for isoleucine tRNA between ND1 and ND2, arginine tRNA between COI and ND4L, lysine tRNA between COII and ATPase 8, and the serine (UCN) tRNA between COIII and ND3. The genes for the other five tRNAs lie outside this fragment. The gene for phenylalanine tRNA is located between cytochrome b and the 12S ribosomal genes. The genes for tRNAglu and tRNAthr are 3′ to the 12S ribosomal gene. The tRNAs for histidine and serine (AGN) are adjacent to each other and lie between ND4 and ND5. These data confirm the novel gene order in mitochondrial DNA (mtDNA) of sea stars and delineate additional distinctions between the sea star and other mtDNA molecules.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Anderson S, Bankier AT, Barrell BG, deBrujin MHL, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJH, Staden R, Young IG (1981) Sequence and organization of the human mitochondrial genome. Nature 290:457–465

    Article  PubMed  Google Scholar 

  • Anderson S, deBruijn MHL, Coulson AR, Eperon IC, Sanger F, Young IG (1982) The complete sequence of bovine mitochondrial DNA: conserved features of the mammalian mitochondrial genome. J Mol Biol 156:683–717

    Article  PubMed  Google Scholar 

  • Battey J, Clayton DA (1980) The transcription map of human mitochondrial DNA implicates transfer RNA excision as a major processing event. J Biol Chem 255:11599–11606.

    PubMed  Google Scholar 

  • Bibb MJ, Van Etten RA, Wright CT, Walberg MW, Clayton DA (1981) Sequence and gene organization of mouse mitochondrial DNA. Cell 26:167–180

    Article  PubMed  Google Scholar 

  • Brown GG, Gadaleta G, Pepe G, Saccone C, Sbisa E (1986) Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA. J Mol Biol 192: 503–511

    Article  PubMed  Google Scholar 

  • Cabot EL, Beckenbach AT (1989) Simultaneous editing of multiple nucleic acid and protein sequences with ESEE. CABIOS 5:233–234

    PubMed  Google Scholar 

  • Cantatore P, Gadaleta MN, Roberti M, Saccone C, Wilson AC (1987) Duplication and remoulding of transfer RNA genes during the evolutionary rearrangement of mitochondrial genomes. Nature 32:853–855

    Article  Google Scholar 

  • Cantatore P, Roberti M, Rainaldi G, Gadaleta MN, Saccone C (1989) The complete nucleotide sequence, gene organization, and genetic code of the mitochondrial genome ofParacentrotus lividus. J Biol Chem 264:10965–10975.

    PubMed  Google Scholar 

  • Clary DO, Wolstenholme DR (1985) The mitochondrial DNA molecule ofDrosophila yakuba: nucleotide sequence, gene organization, and genetic code. J Mol Evol 22:252–271

    PubMed  Google Scholar 

  • Elliot DJ, Jacobs HT (1989) Mutually exclusive synthetic pathways for sea urchin mitochondrial rRNA and mRNA. Mol Cell Biol 9:1069–1082

    PubMed  Google Scholar 

  • Gadaleta G, Pepe G, DeCandia G, Quagliariello C, Sbisa E, Saccone C (1989) The complete nucleotide sequence of theRattus norvegicus mitochondrial genome: cryptic signals revealed by comparative analysis between vertebrates. J Mol Evol 28:497–516

    PubMed  Google Scholar 

  • Garey JR, Wolstenholme DR (1989) Platyhelminth mitochondrial DNA: evidence for early evolutionary origin of a tRNAsef AGN that contains a dihydrouridine arm replacement loop and of serine-specifying AGA and AGG codons. J Mol Evol 28:374–387

    PubMed  Google Scholar 

  • Hattori M, Sakaki Y (1986) Dideoxy sequencing method using denatured plasmid templates. Anal. Biochem 152:232–238

    Article  PubMed  Google Scholar 

  • Haucke H-R, Gellissen G (1988) Different mitochondrial gene orders among insects: exchanged tRNA gene positions in the COII/COIII region between orthopteran and a dipteran species. Curr Genet 14:471–476

    Article  PubMed  Google Scholar 

  • Henikoff S (1987) Unidirectional digestion with exonuclease III in DNA sequence analysis. Methods Enzymol 155:156–165

    PubMed  Google Scholar 

  • Higgins DG, Sharp PM (1988) CLUSTAL: a package for performing multiple sequence alignments on a microcomputer. Gene 73:237–244

    Article  PubMed  Google Scholar 

  • Himeno H, Masaki H, Kawai T, Ohta T, Kumagai I, Miura I, Watanabe K (1987) Unusual genetic codes and a novel gene structure for tRNAAGY Ser in starfish mitochondrial DNA. Gene 56:219–230

    Article  PubMed  Google Scholar 

  • Jacobs H, Elliot D, Math VB, Farquharson A (1988) Nucleotide sequence and gene organization of sea urchin mitochondrial DNA. J Mol Biol 201:185–217

    Article  Google Scholar 

  • Jacobs H, Asakawa S, Araki T, Miura K, Smith MJ, Watanabe K (1989) Conserved tRNA gene cluster in starfish mitochondrial DNA. Curr Genet 15:193–206

    Article  PubMed  Google Scholar 

  • Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 57:333–348

    Google Scholar 

  • Lansman RA, Shade RO, Shapira JF, Avise JC (1981) The use of restriction endonucleases to measure mitochondrial DNA sequence relatedness in natural populations. J Mol Evol 17: 214–226

    Article  PubMed  Google Scholar 

  • Manam S, Van Tuyle GC (1987) Separation and characterization of 5′- and 3′-tRNA processing nucleases from rat liver mitochondria. J Biol Chem 262:10272–10279

    PubMed  Google Scholar 

  • Ojala D, Merkel C, Gelfand R, Attardi G (1980) The tRNA genes punctuate the reading of genetic information in human mitochondrial DNA. Cell 22:393–403

    Article  PubMed  Google Scholar 

  • Ojala D, Montoya J, Attardi G (1981) tRNA punctuation model of RNA processing in human mitochondria. Nature 290:470–474

    Article  PubMed  Google Scholar 

  • Roe BA, Ma D-P, Wilson RK, Wong JF-H (1985) The complete nucleotide sequence of theXenopus laevis mitochondrial genome. J Biol Chem 260:9759–9774

    PubMed  Google Scholar 

  • Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74: 5463–5467

    PubMed  Google Scholar 

  • Smith MJ, Banfield DK, Doteval K, Gorski S, Kowbel DJ (1989) Gene arrangement in sea star mitochondrial DNA demonstrates a major inversion event during echinoderm evolution. Gene 76:181–185

    Article  PubMed  Google Scholar 

  • Spencer WK, Wright CW (1966) Asterozoans. In: Moore RC (ed) Treatise on invertebrate paleontology. Part U. Echinodermata 3, vol 1. The Geological Society of America Inc., and the University of Kansas Press, Lawrence, pp 4–103

    Google Scholar 

  • Thomas WK, Maa J, Wilson AC (1989) Shifting constraints on tRNA genes during mitochondrial DNA evolution in animals. New Biol 1:93–100

    PubMed  Google Scholar 

  • Topper JN, Clayton DA (1989) Identification of transcriptional regulatory elements in human mitochondrial DNA by linker substitution analysis. Mol Cell Biol 9:1200–1211

    PubMed  Google Scholar 

  • Wolstenholme DR, MacFarlane JL, Okimoto R, Clary DO, Wahleithner JA (1987) Bizarre tRNAs inferred from DNA sequences of mitochondrial genomes of nematode worms. Proc Natl Acad Sci USA 84:1324–1328

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Smith, M.J., Banfield, D.K., Doteval, K. et al. Nucleotide sequence of nine protein-coding genes and 22 tRNAs in the mitochondrial DNA of the sea starPisaster ochraceus . J Mol Evol 31, 195–204 (1990). https://doi.org/10.1007/BF02109496

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF02109496

Key words

Navigation