Abstract
Dysfunction of chromatin assembly factor 1 in FASCIATA mutants (fas) of Arabidopsis thaliana results in progressive loss of telomeric DNA. Although replicative telomere shortening is typically associated with incomplete resynthesis of their ends by telomerase, no change in telomerase activity could be detected in vitro in extracts from fas mutants. Besides a possible telomerase malfunction, the telomere shortening in fas mutants could presumably be due to problems with conventional replication of telomeres. To distinguish between the possible contribution of suboptimal function of telomerase in fas mutants under in vivo conditions and problems in conventional telomere replication, we crossed fas and tert (telomerase reverse transcriptase) knockout mutants and analyzed telomere shortening in segregated fas mutants, tert mutants, and double fas tert mutants in parallel. We demonstrate that fas tert knockouts show greater replicative telomere shortening than that observed even in the complete absence of telomerase (tert mutants). While the effect of tert and fas mutations on telomere lengths in double mutants is additive, manifestations of telomere dysfunction in double fas tert mutants (frequency of anaphase bridges, onset of chromosome end fusions, and common involvement of 45S rDNA in chromosome fusion sites) are similar to those in tert mutants. We conclude that in addition to possible impairment of telomerase action, a further mechanism contributes to telomere shortening in fas mutants.
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Abbreviations
- CAF1:
-
Chromatin assembly factor 1
- fas1 :
-
Mutant in the FASCIATA 1 gene
- fas2 :
-
Mutant in the FASCIATA 2 gene
- tert :
-
Mutant in the telomerase reverse transcriptase (TERT) gene
- ASF1:
-
Anti-silencing function 1 protein
- MSI1:
-
Multicopy suppressor of IRA1
References
Bosco N, de Lange T (2012) A TRF1-controlled common fragile site containing interstitial telomeric sequences. Chromosoma 121(5):465–474. doi:10.1007/s00412-012-0377-6
Boule JB, Zakian VA (2006) Roles of Pif1-like helicases in the maintenance of genomic stability. Nucleic Acids Res 34(15):4147–4153. doi:10.1093/Nar/Gkl561
Buonomo SBC, Wu YP, Ferguson D, de Lange T (2009) Mammalian Rif1 contributes to replication stress survival and homology-directed repair. J Cell Biol 187(3):385–398. doi:10.1083/jcb.200902039
Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA minipreparation: version II. Plant Mol Biol Rep 1:19–21
El Hage A, French SL, Beyer AL, Tollervey D (2010) Loss of topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis. Genes Develop 24(14):1546–1558. doi:10.1101/Gad.573310
Endo M, Ishikawa Y, Osakabe K, Abe K, Ito Y, Kameya T, Shibahara K, Kaya H, Araki T, Ichikawa H, Toki S (2006) Analysis of Arabidopsis CAF-1 mutants showing enhanced homologous recombination. Plant Cell Physiol 47:S60–S60
Exner V, Taranto P, Schonrock N, Gruissem W, Hennig L (2006) Chromatin assembly factor CAF-1 is required for cellular differentiation during plant development. Development 133(21):4163–4172. doi:10.1242/dev.02599
Fajkus J, Fulneckova J, Hulanova M, Berkova K, Riha K, Matyasek R (1998) Plant cells express telomerase activity upon transfer to callus culture, without extensively changing telomere lengths. Mol Gen Genet 260(5):470–474
Fitzgerald MS, Riha K, Gao F, Ren S, McKnight TD, Shippen DE (1999) Disruption of the telomerase catalytic subunit gene from Arabidopsis inactivates telomerase and leads to a slow loss of telomeric DNA. Proc Natl Acad Sci U S A 96(26):14813–14818
Fojtova M, Peska V, Dobsakova Z, Mozgova I, Fajkus J, Sykorova E (2011) Molecular analysis of T-DNA insertion mutants identified putative regulatory elements in the AtTERT gene. J Exp Bot 62(15):5531–5545
Gaillard PH, Martini EM, Kaufman PD, Stillman B, Moustacchi E, Almouzni G (1996) Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor I. Cell 86(6):887–896
Gallego ME, White CI (2005) DNA repair and recombination functions in Arabidopsis telomere maintenance. Chromosome Res 13(5):481–491
Heacock M, Spangler E, Riha K, Puizina J, Shippen DE (2004) Molecular analysis of telomere fusions in Arabidopsis: multiple pathways for chromosome end-joining. EMBO J 23(11):2304–2313. doi:10.1038/sj.emboj.76002367600236
Henikoff S (2008) Nucleosome destabilization in the epigenetic regulation of gene expression. Nat Rev Genet 9(1):15–26. doi:10.1038/nrg2206
Hennig L, Bouveret R, Gruissem W (2005) MSI1-like proteins: an escort service for chromatin assembly and remodeling complexes. Trends Cell Biol 15(6):295–302. doi:10.1016/j.tcb.2005.04.004
Hernandez P, Martinparras L, Martinezrobles ML, Schvartzman JB (1993) Conserved features in the mode of replication of eukaryotic ribosomal-RNA genes. EMBO J 12(4):1475–1485
Chen Z, Hui JTL, Ingouff M, Sundaresan V, Berger F (2008) Chromatin assembly factor 1 regulates the cell cycle but not cell fate during male gametogenesis in Arabidopsis thaliana. Development 135(1):65–73
Kamakaka RT, Bulger M, Kaufman PD, Stillman B, Kadonaga JT (1996) Postreplicative chromatin assembly by Drosophila and human chromatin assembly factor 1. Mol Cell Biol 16(3):810–817
Kaufman PD, Kobayashi R, Stillman B (1997) Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I. Genes Dev 11(3):345–357
Kaya H, Shibahara KI, Taoka KI, Iwabuchi M, Stillman B, Araki T (2001) FASCIATA genes for chromatin assembly factor-1 in Arabidopsis maintain the cellular organization of apical meristems. Cell 104(1):131–142
Kirik A, Pecinka A, Wendeler E, Reiss B (2006) The chromatin assembly factor subunit FASCIATA1 is involved in homologous recombination in plants. Plant Cell 18(10):2431–2442
Kohler C, Hennig L, Bouveret R, Gheyselinck J, Grossniklaus U, Gruissem W (2003) Arabidopsis MSI1 is a component of the MEA/FIE polycomb group complex and required for seed development. EMBO J 22(18):4804–4814. doi:10.1093/emboj/cdg444
Leyser HM, Furner IJ (1992) Characterization of three shoot apical meristem mutants of Arabidopsis thaliana. Development 116:397–403
Lin YL, Pasero P (2012) Interference between DNA replication and transcription as a cause of genomic instability. Curr Genomics 13(1):65–73
Liu WH, Roemer SC, Port AM, Churchill ME (2012) CAF-1-induced oligomerization of histones H3/H4 and mutually exclusive interactions with Asf1 guide H3/H4 transitions among histone chaperones and DNA. Nucleic Acids Res. doi:10.1093/nar/gks906
Lopez-Estrano C, Schvartzman JB, Krimer DB, Hernandez P (1998) Co-localization of polar replication fork barriers and rRNA transcription terminators in mouse rDNA. J Mol Biol 277(2):249–256. doi:10.1006/jmbi.1997.1607
Lopez-Estrano C, Schvartzman JB, Krimer DB, Hernandez P (1999) Characterization of the pea rDNA replication fork barrier: putative cis-acting and trans-acting factors. Plant Mol Biol 40(1):99–110. doi:10.1023/A:1026405311132
Mandakova T, Lysak MA (2008) Chromosomal phylogeny and karyotype evolution in x = 7 crucifer species (Brassicaceae). Plant Cell 20(10):2559–2570. doi:10.1105/tpc.108.062166
Mello JA, Sillje HH, Roche DM, Kirschner DB, Nigg EA, Almouzni G (2002) Human Asf1 and CAF-1 interact and synergize in a repair-coupled nucleosome assembly pathway. EMBO Rep 3(4):329–334. doi:10.1093/embo-reports/kvf068kvf068
Mokros P, Vrbsky J, Siroky J (2006) Identification of chromosomal fusion sites in Arabidopsis mutants using sequential bicolour BAC-FISH. Genome 49(8):1036–1042. doi:10.1139/g06-082
Mozgova I, Mokros P, Fajkus J (2010) Dysfunction of chromatin assembly factor 1 induces shortening of telomeres and loss of 45S rDNA in Arabidopsis thaliana. Plant Cell 22(8):2768–2780. doi:10.1105/tpc.110.076182
Ono T, Kaya H, Takeda S, Abe M, Ogawa Y, Kato M, Kakutani T, Scheid OM, Araki T, Shibahara K (2006) Chromatin assembly factor 1 ensures the stable maintenance of silent chromatin states in Arabidopsis. Genes Cells 11(2):153–162
Opresko PL (2008) Telomere ResQue and preservation-roles for the Werner syndrome protein and other RecQ helicases. Mech Ageing Dev 129(1–2):79–90. doi:10.1016/j.mad.2007.10.007
Ramirez-Parra E, Gutierrez C (2007) The many faces of chromatin assembly factor 1. Trends Plant Sci 12(12):570–576
Reinholz E (1966) Radiation induced mutants showing changed inflorescence characteristics. Arab Inf Serv 3:19–20
Riha K, Fajkus J, Siroky J, Vyskot B (1998) Developmental control of telomere lengths and telomerase activity in plants. Plant Cell 10(10):1691–1698
Riha K, McKnight TD, Griffing LR, Shippen DE (2001) Living with genome instability: plant responses to telomere dysfunction. Science 291(5509):1797–1800. doi:10.1126/science.1057110291/5509/1797
Ruckova E, Friml J, Prochazkova Schrumpfova P, Fajkus J (2008) Role of alternative telomere lengthening unmasked in telomerase knock-out mutant plants. Plant Mol Biol 66(6):637–646. doi:10.1007/s11103-008-9295-7
Sfeir A, Kosiyatrakul ST, Hockemeyer D, MacRae SL, Karlseder J, Schildkraut CL, de Lange T (2009) Mammalian telomeres resemble fragile sites and require TRF1 for efficient replication. Cell 138(1):90–103. doi:10.1016/j.cell.2009.06.021
Sharp JA, Fouts ET, Krawitz DC, Kaufman PD (2001) Yeast histone deposition protein Asf1p requires Hir proteins and PCNA for heterochromatic silencing. Curr Biol 11(7):463–473
Shibahara K, Stillman B (1999) Replication-dependent marking of DNA by PCNA facilitates CAF-1-coupled inheritance of chromatin. Cell 96(4):575–585
Schonrock N, Exner V, Probst A, Gruissem W, Hennig L (2006) Functional genomic analysis of CAF-1 mutants in Arabidopsis thaliana. J Biol Chem 281(14):9560–9568
Siroky J, Zluvova J, Riha K, Shippen DE, Vyskot B (2003) Rearrangements of ribosomal DNA clusters in late generation telomerase-deficient Arabidopsis. Chromosoma 112(3):116–123. doi:10.1007/s00412-003-0251-7
Smith S, Stillman B (1989) Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro. Cell 58(1):15–25
Stewart JA, Wang F, Chaiken MF, Kasbek C, Chastain PD, Wright WE, Price CM (2012) Human CST promotes telomere duplex replication and general replication restart after fork stalling. EMBO J 31(17):3537–3549. doi:10.1038/emboj.2012.215
Tyler JK, Collins KA, Prasad-Sinha J, Amiott E, Bulger M, Harte PJ, Kobayashi R, Kadonaga JT (2001) Interaction between the Drosophila CAF-1 and ASF1 chromatin assembly factors. Mol Cell Biol 21(19):6574–6584
Wahba L, Amon JD, Koshland D, Vuica-Ross M (2011) RNase H and multiple RNA biogenesis factors cooperate to prevent RNA:DNA hybrids from generating genome instability. Molecular Cell 44(6):978–988. doi:10.1016/j.molcel.2011.10.017
Winkler DD, Zhou H, Dar MA, Zhang Z, Luger K (2012) Yeast CAF-1 assembles histone (H3-H4)2 tetramers prior to DNA deposition. Nucleic Acids Res 40(20):10139–10149. doi:10.1093/nar/gks812
Worsdell WC (1905) Fasciation: its meaning and origin. New Phytol 4:55–74
Acknowledgments
The authors would like to thank Ronald Hancock for critical reading of the manuscript and Jana Kapustová for excellent technical assistance. This work was supported by the Czech Science Foundation (P501/11/0289) and by the project “CEITEC—Central European Institute of Technology” (CZ.1.05/1.1.00/02.0068) from the European Regional Development Fund.
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Jaške, K., Mokroš, P., Mozgová, I. et al. A telomerase-independent component of telomere loss in chromatin assembly factor 1 mutants of Arabidopsis thaliana . Chromosoma 122, 285–293 (2013). https://doi.org/10.1007/s00412-013-0400-6
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DOI: https://doi.org/10.1007/s00412-013-0400-6