Abstract
For the fifth time I have provided a set of solvation energies (1 M gas to 1 M aqueous) for a SAMPL challenge. In this set there are 23 blind compounds and 30 supplementary compounds of related structure to one of the blind sets, but for which the solvation energy is readily available. The best current values of each compound are presented along with complete documentation of the experimental origins of the solvation energies. The calculations needed to go from reported data to solvation energies are presented, with particular attention to aspects which are new to this set. For some compounds the vapor pressures (VP) were reported for the liquid compound, which is solid at room temperature. To correct from VPsubcooled liquid to VPsublimation requires ΔSfusion, which is only known for mannitol. Estimated values were used for the others, all but one of which were benzene derivatives and expected to have very similar values. The final compound for which ΔSfusion was estimated was menthol, which melts at 42 °C so that modest errors in ΔSfusion will have little effect. It was also necessary to look into the effects of including estimated values of ΔCp on this correction. The approximate sizes of the effects of inclusion of ΔCp in the correction from VPsubcooled liquid to VPsublimation were estimated and it was noted that inclusion of ΔCp invariably makes ΔGS more positive. To extend the set of compounds for which the solvation energy could be calculated we explored the use of boiling point (b.p.) data from Reaxys/Beilstein as a substitute for studies of the VP as a function of temperature. B.p. data are not always reliable so it was necessary to develop a criterion for rejecting outliers. For two compounds (chlorinated guaiacols) it became clear that inclusion represented overreach; for each there were only two independent pressure, temperature points, which is too little for a trustworthy extrapolation. For a number of compounds the extrapolation from lowest temperature at which the VP was reported to 25 °C was long (sometimes over 100°) so that it was necessary to consider whether ΔCp might have significant effects. The problem is that there are no experimental values and possible intramolecular hydrogen bonds make estimation uncertain in some cases. The approximate sizes of the effects of ΔCp were estimated, and it was noted that inclusion of ΔCp in the extrapolation of VP down to room temperature invariably makes ΔGs more negative.
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We thank the Natural Sciences and Engineering Research Council of Canada for financial support of this work.
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Appendix
Appendix
No claim is made for originality of the derivations given here; they are included to help the reader understand where the final equations used in the calculations actually came from.
Derivation of ideal solubility for mannitol
Robinson and Stokes [15] have reported the osmotic, ϕ. and activity, γ, coefficients for mannitol (species C in what follows) as functions of concentration (molal)
The solubility of mannitol is 1.186 m [14].ΔG for mannitol going from saturated solution to 0.01 m (assumed ideal; γc = 1.000) can be calculated from:
ΔG for mannitol going from 0.01 m solution to 1.00 m solution, assuming ideality
No literature values of the densities for mannitol solutions were found. A sucrose solution with the same g/100 g concentration had density = 1.08 [271] while a glycerol solution with the same g/100 g concentration had density = 1.05 [271].
Definitions for molal and molar concentrations were taken from Alberty et al. [272]
For conversion of a 0.01 M to saturated solution (M scale), if ρ = 1.05, ΔG = .593*ln(1.05/.01) = +2.76 kcal. If instead ρ = 1.02, ΔG = .593*ln(1.02/.01) = +2.74.
The average = 2.75. Thus ΔG for solid to 1 M aqueous is −2.84 + 2.75 = −0.09 kcal/mol. A simple conclusion is that in the case of mannitol, using m or M makes very little difference to the value of ΔG for solid to 1 M aqueous.
A full error analysis was carried out for the calculation of the ideal saturated molarity for Mannitol.
With ρ = 1.015, σρ* = 0.02, ϕ = 1.017, σϕ = 0.02, n2 = 1.184, and σn2 = 0.01 this formula leads to σM = 0.029
Derivation of effect of finite ΔCp on extrapolated vapor pressure
Constant ΔHv
The data are centered on T = Tx. By fitting to the Clausius–Clapeyron equation we get \(\Delta {\text{H}}_{\text{v}}^{{{\text{T}}_{\text{x}} }}\).On this assumption, the VP at T = θ is given by
Constant ΔCp, variable ΔHv
If we know or have estimated ΔCp, at T = θ, ΔC θp , then we can calculate \(\Delta {\text{H}}_{\text{v}}^{\uptheta}\) from \(\Delta {\text{H}}_{\text{v}}^{{{\text{T}}_{\text{x}} }}\):
On this assumption, the VP at T = θ is given by
which can be simplified to
The free energy of vaporization (pure compound to vapor at 1 M, p = p1M atm) is given by
where R is the gas constant in kcal mol−1 K−1 and R′ is the gas constant in L atm mol−1 K−1.
Thus
The effect on the free energy of solvation of changing from the constant ΔHv assumption to the constant ΔCp assumption is then
where p θC is the VP at temperature θ calculated assuming constant ΔCp and temperature dependent ΔHv and p θH is the VP at temperature θ calculated assuming constant ΔHv.
which simplifies to:
Substituting for \(\Delta {\text{H}}_{\text{v}}^{{{\text{T}}_{\text{x}} }}\):
which simplifies to:
The solvation free energy is given by
where c is the concentration of the compound in water. The effect of changing from a VP \({\text{p}}_{\text{H}}^{\uptheta}\) based on an assumed constant ΔHv to a VP \({\text{p}}_{\text{C}}^{\uptheta}\) based on an assumed constant ΔCp is given by
The function \(\left( {{\text{T}}_{\text{x}} -\uptheta} \right) +\uptheta\ln \left( {\frac{\uptheta}{{{\text{T}}_{\text{x}} }}} \right)\) is invariably positive, and \(\Delta {\text{C}}_{\text{p}}^{\uptheta}\) is always negative so \(\Delta \Delta {\text{G}}_{\text{s}}\) is always negative. It seems that \(\Delta {\text{C}}_{\text{p}}^{\uptheta}\) must always be negative for normal liquids because \(\Delta {\text{H}}_{\text{v}}^{\uptheta}\) has a finite value at room temperature but is zero at the critical point.
Derivation of the correction from VPsub-cooled liquid to VPsolid
At the outset, for most of the compounds which are solid at room temperature but for which the VP refers to the liquid or sub-cooled liquid, all that is known are: the VP at θ; the melting point, Tfus; that the ln(p) versus 1/T lines meet at 1/Tfus and the entropy of fusion (measured or estimated). In the first treatment we are implicitly assuming that ΔCp can be ignored for both liquid and solid; this is a reasonable assumption for sublimation, where it is common to use a general value of ΔCp = −12 cal/K/mol, but less so for evaporation of a liquid where for the sizes of molecules considered here ΔCp is in the range −30 to −40. Next we will examine the effects of going to the next approximation, namely that ΔH varies with temperature but ΔCp is constant
-
(a)
First assumption (ΔH terms are temperature independent)
Let ln(p) = a + b/T for the liquid at any temperature and ln(p) = a′ + b′/T for the solid at temperatures at or below the m.p., Tfus.
a + b/θ = a′ + b′/θ + cH where cH is the amount which must be added to ln(vp sublimation) to get ln(vp subcooled liquid). The subscript cH denotes the assumption of temperature independent ΔH values.
Take the difference between the equations for T = Tfus and, substitute for b’ and simplify
-
(b)
Second assumption (The ΔCp terms are temperature independent):
Assume that we know \(\Delta {\text{H}}_{\text{v}}^{{{\text{T}}_{\text{fus}} }}\) (It will cancel out in the end.), \(\Delta {\text{C}}_{\text{p}}^{\text{vap}}\), \(\Delta {\text{C}}_{\text{p}}^{\text{sub}}\) and ln(psub-cooled). We will derive an expression for cC the correction to be added to ln(psublimation) to obtain ln(psub-cooled). The subscript cC denotes the assumption of temperature independent ΔCp values.
The VP at Tfus can be written:
Or the VP at θ in terms of temperatures, \(\Delta {\text{H}}_{\text{v}}^{{{\text{T}}_{\text{fus}} }}\), and \(\Delta {\text{C}}_{\text{p}}^{\text{vap}}\) can be written as:
Now we will do the same for the sublimation pressure. First we note that at any temperature T (less than or equal to Tfus):
and
Now writing \(\Delta {\text{H}}_{\text{sub}}^{\text{T}}\) in terms of temperature independent quantities and T itself we obtain:
Now we can write the revised definition of the correction cC, the quantity to be added to \(\ln \left( {{\text{p}}_{\text{sub}}^{\uptheta} } \right)\) to obtain \(\ln \left( {{\text{p}}_{\text{v}}^{\uptheta} } \right)\), recalling that at Tfus, \(\ln \left( {{\text{p}}_{\text{sub}}^{{{\text{T}}_{\text{fus}} }} } \right) = \ln \left( {{\text{p}}_{\text{v}}^{{{\text{T}}_{\text{fus}} }} } \right)\)
Or in terms of \(\Delta {\text{S}}_{\text{fus}}^{{{\text{T}}_{\text{fus}} }}\)
If the heat capacity terms are set to zero, then this becomes the equation deduced above for the first hypothesis.
In the challenge dataset the worst case was 2,6-syringealdehyde, which is the highest melting compound of those where VP for the sub-cooled liquid must be reduced to VP for the solid. For this compound inclusion of the estimated ΔCp values lowers ln(vp) by 2.99. What is of interest is the effect on ΔGs. From the derivation of the effect of including heat capacity terms on the extrapolated VP, the effect on ΔGs can be written as:
where p θC is the VP at temperature θ calculated assuming constant ΔCp values and temperature dependent ΔHv values and p θH is the VP at temperature θ calculated assuming constant ΔHv values.
Thus
In the case of 2,6-syringealdehyde, the change in ΔGs on inclusion of ΔCp values relative to the value of the change in ΔGs values assuming constant ΔH terms, is (at 25 °C) +0.593*1.57 = +0.93 kcal/mol, meaning that the correction from VPsub-cooled liquid to VPsublimation would be smaller with inclusion of ΔCp terms. This value is based on estimated ΔCp values, which may be in error.
The additivity scheme reported by Chickos et al. [16] has some unusual features which make it a bit tricky to apply until one gets on to it. Accordingly this table is included to help the interested reader who wishes to apply the method (Tables 4, 5).
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Guthrie, J.P. SAMPL4, a blind challenge for computational solvation free energies: the compounds considered. J Comput Aided Mol Des 28, 151–168 (2014). https://doi.org/10.1007/s10822-014-9738-y
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DOI: https://doi.org/10.1007/s10822-014-9738-y