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Yet another polymorph of α-synuclein: solid-state sequential assignments

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Abstract

Parkinson’s disease is a neurological human proteinopathy, which is caused by the accumulation of protein aggregates of high molecular mass. α-Synuclein is a major component of these fibrillar, β-sheet rich, insoluble assemblies and is deposited in the form of amyloids. Structural characterization of amyloids is possible by solid-state NMR, although no atomic-resolution structure is available as of today. α-Synuclein, as many other pathology-related fibril-forming proteins, can form a number of different polymorphs that are sometimes tricky to obtain in pure form. Here, we describe the chemical shifts and secondary structure analysis of a polymorph that also adopts mainly β-sheet conformation, with a fibrillar core ranging from residues 38 to 94. In addition, residues 15–20 from the N-terminus found to be part of a rigid ordered β-sheet. The chemical shifts differ substantially from the polymorph we previously assigned.

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References

  • Böckmann A, Gardiennet C, Verel R, Hunkeler A, Loquet A, Pintacuda G, Emsley L, Meier BH, Lesage A (2009) Characterization of different water pools in solid-state NMR protein samples. J Biomol NMR 45(3):319–327

    Article  Google Scholar 

  • Cohlberg JA, Li J, Uversky VN, Fink AL (2002) Heparin and other glycosaminoglycans stimulate the formation of amyloid fibrils from α-synuclein in vitro. Biochemistry 41(5):1502–1511

    Article  Google Scholar 

  • Comellas G, Lemkau LR, Nieuwkoop AJ, Kloepper KD, Ladror DT, Ebisu R, Woods WS, Lipton AS, George JM, Rienstra CM (2011) Structured regions of α-synuclein fibrils include the early-onset Parkinsons disease mutation sites. J Mol Biol 411(4):881–895

    Google Scholar 

  • Gath J, Habenstein B, Bousset L, Melki R, Meier BH, Böckmann A (2012) Solid-state NMR sequential assignments of α-synuclein. Biomol NMR Assign 6(1):51–55

    Article  Google Scholar 

  • Habenstein B, Wasmer C, Bousset L, Sourigues Y, Schütz A, Loquet A, Meier BH, Melki R, Böckmann A (2011) Extensive de novo solid-state NMR assignments of the 33 kDa C-terminal domain of the Ure2 prion. J Biomol NMR 51(3):235–243

    Article  Google Scholar 

  • Hansen C, Angot E, Bergström A-L, Steiner JA, Pieri L, Paul G, Outeiro TF, Melki R, Kallunki P, Fog K, Li J-Y, Brundin P (2011) α-Synuclein propagates from mouse brain to grafted dopaminergic neurons and seeds aggregation in cultured human cells. J Clin Invest 121(2):715–725

    Article  Google Scholar 

  • Heise H, Hoyer W, Becker S, Andronesi O, Riedel D, Baldus M (2005) Molecular-level secondary structure, polymorphism, and dynamics of full-length α-synuclein fibrils studied by solid-state NMR. Proc Natl Acad Sci USA 102(44):15871–15876

    Article  ADS  Google Scholar 

  • Kim H-Y, Cho M-K, Kumar A, Maier E, Siebenhaar C, Becker S, Fernández CO, Lashuel HA, Benz R, Lange A, Zweckstetter M (2009) Structural properties of pore-forming oligomers of α-synuclein. J Am Chem Soc 131(47):17482–17489

    Article  Google Scholar 

  • Lv G, Kumar A, Giller K, Orcellet ML, Riedel D, Fernandez CO, Becker S, Lange A (2012) Structural comparison of mouse and human α-synuclein amyloid fibrils by solid-state NMR. J Mol Biol 420(1–2):99–111

    Article  Google Scholar 

  • Schuetz A, Wasmer C, Habenstein B, Verel R, Greenwald J, Riek R, Böckmann A, Meier BH (2010) Protocols for the sequential solid-state NMR spectroscopic assignment of a uniformly labeled 25 kDa protein: HET-s(1-227). ChemBioChem 11(11):1543–1551

    Article  Google Scholar 

  • Stevens TJ, Fogh RH, Boucher W, Higman VA, Eisenmenger F, Bardiaux B, van Rossum B-J, Oschkinat H, Laue ED (2011) A software framework for analysing solid-state MAS NMR data. J Biomol NMR 51(4):437–447

    Article  Google Scholar 

  • Vranken W, Boucher W, Stevens T, Fogh R, Pajon A, Llinas P, Ulrich E, Markley J, Ionides J, Laue E (2005) The CCPN data model for NMR spectroscopy: development of a software pipeline. Proteins 59(4):687–696

    Article  Google Scholar 

  • Wishart DS, Sykes BD (1994) The 13C Chemical-Shift Index: a simple method for the identification of protein secondary structure using 13C chemical-shift data. J Biomol NMR 4(2):171–180

    Article  Google Scholar 

Download references

Acknowledgments

This work was supported by the Agence Nationale de la Recherche (ANR-11-BSV8-021-01), the ETH Zurich, the Swiss National Science Foundation (Grant 200020_124611), the Era-Net Neuron (project MIPROTRAN, ANR-08-NEUR-001-01) and the Centre National de la Recherche Scientifique. We also acknowledge support from the European Commission under the Seventh Framework Programme (FP7), contract Bio-NMR 261863.

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Correspondence to Ronald Melki, Beat H. Meier or Anja Böckmann.

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Julia Gath and Luc Bousset have contributed equally to this work.

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Gath, J., Bousset, L., Habenstein, B. et al. Yet another polymorph of α-synuclein: solid-state sequential assignments. Biomol NMR Assign 8, 395–404 (2014). https://doi.org/10.1007/s12104-013-9526-y

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