Determination of the base composition of deoxyribonucleic acid from its buoyant density in CsCl

https://doi.org/10.1016/S0022-2836(62)80100-4Get rights and content

A comprehensive study of the buoyant density of DNA as a function of composition has been made. The linear relation previously reported has been confirmed. Based on a value of 1·710 g cm−3 for DNA from Escherichia coli the following relation was obtained from the best fit of measurements on 51 different DNA samples: ρ=1660+0098(GC) where ρ refers to buoyant density and (GC) to the mole fraction of guanine plus cytosine. On this basis the composition of DNA from 36 other sources, not previously reported, has been estimated. Several specific observations were made. Bimodal distributions in the density-gradient band patterns were found in DNA from calf thymus and salmon sperm. The DNA of the commonly studied T-even bacteriophages exhibits altered densities due to the presence of gluco-sylated hydroxymethylcytosine. The DNA of φX174 phage is abnormally heavier suggesting less base-pairing than normal denatured, single-stranded DNA.

References (33)

  • A.N. Belozersky et al.
  • E.H. Creaser et al.

    Virology

    (1957)
  • A.D. Kaiser et al.

    J. Mol. Biol.

    (1960)
  • K.S. Kirby

    Biochim. biophys. Acta

    (1959)
  • C.A. Knight

    Advanc. Virus Res.

    (1954)
  • J. Marmur

    J. Mol. Biol.

    (1961)
  • J. Marmur et al.

    J. Mol. Biol.

    (1961)
  • T. Minagawa et al.

    Arch. Biochem. Biophys.

    (1959)
  • H.K. Schachman et al.

    J. Biol. Chem.

    (1960)
  • C.L. Schildkraut et al.

    J. Mol. Biol.

    (1961)
  • R.L. Sinsheimer

    J. Mol. Biol.

    (1959)
  • N. Sueoka

    J. Mol. Biol.

    (1961)
  • E. Volkin et al.

    Virology

    (1958)
  • E. Chargaff
  • P. Doty et al.

    Proc. Nat. Acad. Sci., Wash.

    (1960)
  • T.N. Envreinova et al.

    Biokhimiya

    (1959)
  • Cited by (743)

    • Quantifying local randomness in human DNA and RNA sequences using Erdös motifs

      2019, Journal of Theoretical Biology
      Citation Excerpt :

      There are three different ways to split the four symbols into two groups: (a) R/Y binarization combines AG (R for purine) and CT (Y for pyrimidine), (b) W/S binarization combines AT (W for weak) and CG (S for strong), (c) K/M binarization combines GT (K for keto) and AC (M for amino). The W/S binarization characterizes the binding strength between the two DNA strands (G and C bind more strongly), and GC-content is an experimentally measurable quantity (Schildkraut et al., 1962) which is widely studied in genomic analysis (Li, 2013). The R/Y binarization highlights the size difference of the two types of bases (A and G are larger in size), and has been proposed to be relevant to codon patterns (Shepherd, 1981), regulatory sequence patterns (Christophe et al., 1985), and the double helix structure (Arnott et al., 1974).

    • Stable isotope probing with <sup>18</sup>O-water to investigate microbial growth and death in environmental samples

      2016, Current Opinion in Biotechnology
      Citation Excerpt :

      After incubation, nucleic acids are extracted from soil and separated along a cesium chloride gradient through isopycnic centrifugation. DNA will distribute along the gradient according to the guanine–cytosine (GC) content of the DNA, which affects its buoyant density in cesium chloride [10,11]. The DNA will also distribute along the gradient according to the extent of labeling with 18O atoms.

    View all citing articles on Scopus

    Present address: Department of Biochemistry, Stanford University Medical Center, Palo Alto, California.

    Present address: Graduate Department of Biochemistry, Brandeis University, Waltham, Mass.

    View full text