Journal of Molecular Biology
Determination of the base composition of deoxyribonucleic acid from its buoyant density in CsCl
References (33)
- et al.
- et al.
Virology
(1957) - et al.
J. Mol. Biol.
(1960) Biochim. biophys. Acta
(1959)Advanc. Virus Res.
(1954)J. Mol. Biol.
(1961)- et al.
J. Mol. Biol.
(1961) - et al.
Arch. Biochem. Biophys.
(1959) - et al.
J. Biol. Chem.
(1960) - et al.
J. Mol. Biol.
(1961)
J. Mol. Biol.
J. Mol. Biol.
Virology
Proc. Nat. Acad. Sci., Wash.
Biokhimiya
Cited by (743)
Applications of DNA/RNA-stable isotope probing (SIP) in environmental microbiology
2021, Methods in MicrobiologyOptimizing ultracentrifugation conditions for DNA-based stable isotope probing (DNA-SIP)
2020, Journal of Microbiological MethodsQuantifying local randomness in human DNA and RNA sequences using Erdös motifs
2019, Journal of Theoretical BiologyCitation Excerpt :There are three different ways to split the four symbols into two groups: (a) R/Y binarization combines AG (R for purine) and CT (Y for pyrimidine), (b) W/S binarization combines AT (W for weak) and CG (S for strong), (c) K/M binarization combines GT (K for keto) and AC (M for amino). The W/S binarization characterizes the binding strength between the two DNA strands (G and C bind more strongly), and GC-content is an experimentally measurable quantity (Schildkraut et al., 1962) which is widely studied in genomic analysis (Li, 2013). The R/Y binarization highlights the size difference of the two types of bases (A and G are larger in size), and has been proposed to be relevant to codon patterns (Shepherd, 1981), regulatory sequence patterns (Christophe et al., 1985), and the double helix structure (Arnott et al., 1974).
Stable isotope probing with <sup>18</sup>O-water to investigate microbial growth and death in environmental samples
2016, Current Opinion in BiotechnologyCitation Excerpt :After incubation, nucleic acids are extracted from soil and separated along a cesium chloride gradient through isopycnic centrifugation. DNA will distribute along the gradient according to the guanine–cytosine (GC) content of the DNA, which affects its buoyant density in cesium chloride [10,11]. The DNA will also distribute along the gradient according to the extent of labeling with 18O atoms.
Large-scale evaluation of experimentally determined DNA G+C contents with whole genome sequences of prokaryotes
2015, Systematic and Applied Microbiology
- †
Present address: Department of Biochemistry, Stanford University Medical Center, Palo Alto, California.
- ‡
Present address: Graduate Department of Biochemistry, Brandeis University, Waltham, Mass.