Basic NeuroscienceAveLI: A robust lateralization index in functional magnetic resonance imaging using unbiased threshold-free computation
Highlights
► We have developed a new laterality index for functional magnetic resonance imaging. ► This theory-based index provides a clear indication of overall asymmetry. ► Degrees of lateralization at all voxel t-value thresholds are averaged within regions. ► The computation algorithm is simple and robust against noise and outliers. ► High reproducibility and laterality categorization are shown using two language tasks.
Introduction
One prominent contribution of functional magnetic resonance imaging (fMRI) is the ability to quantitatively measure hemispheric lateralization in a noninvasive manner (Desmond et al., 1995, Binder et al., 1995, Cuenod et al., 1995, Gaillard et al., 1997). Such measurement is usually referred to as a laterality index (LI) or lateralization/asymmetry index. LIs have been used frequently as a substitute for the Wada test (Wada and Rasmussen, 1960, Wada, 2009), which classifies patients as left or right lateralized for language and memory (but see Meador, 2004). The asymmetry degree indicated by LI can be utilized in correlation studies such as predicting rates of recovery of limb movement (Naccarato et al., 2006, Calautti et al., 2007, Calautti et al., 2010), verbal memory decline after epilepsy surgery (Binder et al., 2008), and postoperative naming deficits (Powell et al., 2008). Another advantage of the LI is increased spatial resolution to the voxel level (Liegeois et al., 2002), which can be helpful in pre-surgical planning (Powell and Duncan, 2005, Sunaert, 2006, Tieleman et al., 2009, Giussani et al., 2010, Mehta and Klein, 2010, Binder, 2011). However, the introduction of the LI has also yielded a series of computational problems (Wilke and Lidzba, 2007, Seghier, 2008). One of the intrinsic problems is the lack of a full rationale for deriving the LI. We propose an intuitively comprehensible LI that indicates how consistent lateralized activation is across all voxel t-value thresholds.
Three primary issues are to be considered in the computation of an LI: the computational unit, activation thresholding, and the computing procedure. First, two measures are conventionally applied to define the computational unit: activated voxel number and t-value summation (Jansen et al., 2006, Wilke and Lidzba, 2007). A frequently used LI counts the number of “activated” voxels that reach a certain statistical threshold, such as p < 0.001, across the statistical parametric map (SPM) of the regions of interest (ROIs) for the left and right hemispheres. These voxel numbers are entered as the terms “Left” and “Right” into the formula (Left − Right)/(Left + Right) (Desmond et al., 1995). However, if we consider a case with equal numbers of activated voxels in each hemisphere but with higher t-values in the left, a measure of t-values instead of activated voxel numbers appears to be more reasonable because it would reflect the greater task-related activation in the left hemisphere. Second, the thresholding of activation is a problem because we often observe a failure of activation in a number of patients at predefined SPM thresholds. To address this problem, researchers often individually customize the threshold. For example, some researchers use half of the mean value of the t-values of the top 5% of activated voxels (Fernández et al., 2001, Calautti et al., 2007), or the mean intensity (Wilke and Lidzba, 2007). A challenge of these procedures is finding a legitimate algorithm using these specific parameters. The definition of the t-value threshold is crucial because the LI varies considerably with the threshold (Fig. 1) (Wilke and Lidzba, 2007, Jones et al., 2010). This difficulty can be addressed by developing a method that does not set a threshold for the t-values.
The last difficulty with the LI is the rationale for the formula used in its computation. The non-thresholding methods proposed so far have included empirical and/or arbitrary techniques without fully supported justifications. Nagata et al. (2001) used the coefficients of an empirically derived approximate equation for the voxel z-score distribution. Others created voxel distributions based on weighted statistical values (Branco et al., 2006, Suarez et al., 2009). The main aim of the weighting is to reduce noise products at lower t-values, but it is important to note that this weighting is arbitrarily defined. A “bootstrap” method that uses resampling and iterated computations from ROIs was also proposed (Wilke and Schmithorst, 2006). The authors actually used only the central 50% of the generated LI histogram in their paper, but it is possible to use the entire range. Jones et al. (2010) examined histograms of t-values from whole hemispheres and analyzed deviations from a normal distribution to provide a faster and more practical method for use prior to surgeries. Another idea was to examine the deviation of voxel number distributions from a normative subject group (Abbott et al., 2010); estimations of the normative data are necessary in advance. Another interesting method uses the spatial coherence of fMRI signals and assumes that the side with more coherent signal changes in the ROI reflects greater lateralization (Wang et al., 2009). This method proposed by Wang et al. touches upon a new aspect of brain activation and needs to be compared further with other LIs.
Here, we propose a comprehensible and rational LI called AveLI that uses the sum of t-values as the computational unit and employs t-values in all voxels for the thresholding.
Section snippets
Computing procedure
LI computation typically uses an SPM file associated with a statistical value (such as a t-value or z-score) derived from the voxel-based computation of a given condition contrast. If we employ a t-value threshold of t = 3.15, the voxels with t-values equal to and greater than 3.15 are used to calculate the LI. A typical LI counts the numbers of voxels that exceed the threshold and applies the standard formula (Left − Right)/(Left + Right). It may be preferable to use the sum of t-values instead of
Simulation data
Artificial datasets (91 × 109 × 91 matrix) assumed to represent leftward asymmetries with outliers in the right hemisphere were systematically created (Fig. 3). There were two conditions for the left hemisphere voxel intensity; one had a value of 1 in all voxels, whereas the other had a value of 4. The two conditions were created to have lower and higher values than the SPM threshold of 3.15 (see later). In the right hemisphere, all voxels had a value of 0 except for a portion located in the
Simulation
We confirmed that the two conditions with voxel values of 1 and 4 in the left ROI yielded identical results across LIs, with the exceptions of spmLI and spmLI_v. We found four types of resistance to outliers (Fig. 3). First, the AveLI_v and baseLI_v stably maintained strong leftward lateralization. The spmLI_v also maintained strong left lateralization when the left ROI voxel value was 4 (spmLI_v 4). Second, the AveLI, Bootstrap_LI, T_weighted_v_LI and baseLI showed a gradual decrease with
Resistance to outliers
The simulation results revealed almost equal resistances to outliers in all recently-developed “non-thresholding” LIs, i.e., AveLI, Bootstrap_LI (Wilke and Lidzba, 2007), and T_weighted_v_LI (Branco et al., 2006) (Fig. 3). These LIs decreased when outlier values (in 27 or 75 voxel outlier blob simulations) in the non-dominant side were five or more times larger than the t-values in the dominant side. These results can be deemed to show strong resistance because outliers five times the magnitude
Acknowledgements
We would like to express our warmest gratitude to Chia-Lin Koh and Hsiu-I Chen for their helpful discussion on brain lateralization. We are thankful to Dr. Marko Wilke who generously provided their excellent LI-tool. We also acknowledge all the personnel and participants involved in the fMRI studies. This work was supported in part by the National Science Council Taiwan (NSC99-3112-B-002-030) and the National Taiwan University.
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