Elsevier

Genomics

Volume 105, Issues 5–6, May 2015, Pages 253-264
Genomics

Review
Transcriptome of the human retina, retinal pigmented epithelium and choroid

https://doi.org/10.1016/j.ygeno.2015.01.008Get rights and content
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Highlights

  • We provide a brief overview of the eye structure with an emphasis on its posterior layers

  • We summarize the data and techniques used to characterize the human retina and RPE/choroid transcriptome

Abstract

The retina and its adjacent supporting tissues – retinal pigmented epithelium (RPE) and choroid – are critical structures in human eyes required for normal visual perception. Abnormal changes in these layers have been implicated in diseases such as age-related macular degeneration and glaucoma. With the advent of high-throughput methods, such as serial analysis of gene expression, cDNA microarray, and RNA sequencing, there is unprecedented opportunity to facilitate our understanding of the normal retina, RPE, and choroid. This information can be used to identify dysfunction in age-related macular degeneration and glaucoma. In this review, we describe the current status in our understanding of these transcriptomes through the use of high-throughput techniques.

Abbreviations

AMD
age-related macular degeneration
eQTL
expression quantitative trait loci
GWAS
genome-wide association studies
FPKM
Fragments Per Kilobase of gene per Million mapped fragment
MAQC
MicroArray Quality Control
MR
macular retina
PLIER
Probe Logarithmic Intensity Error
PR
peripheral retina
RPE
retinal pigment epithelium
RNA-Seq
RNA sequencing
SAGE
serial analysis of gene expression

Keywords

Age-related macular degeneration
cDNA microarray
Glaucoma
Retina
Retinal pigmented epithelium
Choroid
RNA-Seq
Serial analysis of gene expression
Transcriptome

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