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Seasonal changes in the microbial community of a salt marsh, measured by phospholipid fatty acid analysis

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Abstract

Microbial activity within the environment can have distinct geochemicaleffects, and so changes in a microbial community structure can result ingeochemical change. We examined seasonal changes in both the microbialcommunityand the geochemistry of an inter-tidal salt marsh in north-west England tocharacterise biogeochemical processes occurring at this site.Phospholipid fatty acid (PLFA) analysis of sediment samples collected atmonthly intervals was used to measure seasonal changes in microbial biomass andcommunity structure. The PLFA data were analysed using multivariate techniques(Ward's method and the Mahalanobis distance metric), and we show that the useofthe Mahalanobis distance metric improves the statistical analysis by providingdetailed information on the reasons samples cluster together and identifyingthedistinguishing features between the separate clusters. Five clusters of likesamples were defined, showing differences in the community structure over thecourse of a year.At all times, the microbial community was dominated by PLFA associated withaerobic bacteria, but this was most pronounced in summer (August). Theabundanceof branched fatty acids, a measure of the biomass of anaerobes, started toincrease later in the year than did those associated with aerobes and thefungalbiomarker 18:2ω6 showed a brief late-summer peak.The salt marsh remained mildly oxic throughout the year despite the increase inmicrobial respiration, suggested by the large increases in the abundance ofPLFA, in the warmer months. The conditions therefore remained most favourablefor aerobic species throughout the year, explaining their continual dominanceatthis site. However, as the abundance of PLFA synthesised by anaerobesincreased,increases in dissolved Mn concentrations were observed, which we suggest weredue to anaerobic respiration of Mn(IV) to Mn(II). Overall, the geochemicalconditions were consistent with the microbial community structure and changeswithin it.

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References

  • Bå å th E., Frostegå rd A., Díaz-Raviñ a M. and Tunlid A. 1998. Microbial community based measurements to estimate heavy metal effects in soil: the use of phospholipid fatty acid patterns and bacterial community tolerance. Ambio 27: 58-61.

    Google Scholar 

  • Bardgett R.D., Frankland J.C. and Whittaker J.B. 1993. The effects of agricultural management on the soil biota of some upland grasslands. Agriculture Ecosystems and Environment 45: 25-45.

    Google Scholar 

  • Bardgett R.D., Hobbs P.J. and Frostegå rd A. 1996. Changes in soil fungal:bacterial biomass ratios following reductions in the intensity of management of an upland grassland. Biology and Fertility of Soils 22: 261-264.

    Google Scholar 

  • Bardgett R.D., Lovell R.D., Hobbs P.J. and Jarvis S.C. 1999. Seasonal changes in soil microbial communities along a fertility gradient of temperate grasslands. Soil Biology and Biochemistry 31: 1021-1030.

    Google Scholar 

  • Bligh E.G. and Dyer W.J. 1959. A rapid method of total lipid extraction and purification. Canadian Biochemistry and Physiology 37: 911-917.

    Google Scholar 

  • Bobbie R.J. and White D.C. 1980. Characterization of benthic microbial community structure by highresolution gas chromatography of fatty acid methyl esters. Appl. Environ. Microbiol. 39: 1212-1222.

    Google Scholar 

  • Bryan N.D. 1991. A Computer Program for Calculating Mahalanobis Distances. Department of Chemistry, University of Manchester.

  • Carr A.P. and Blackley M.W.L. 1986. Implications of sedimentological and hydrological processes on the distribution of radionuclides: the example of a salt marsh near Ravenglass, Cumbria. Estuarine Coastal and Shelf Sci. 22: 529-543.

    Google Scholar 

  • Doetsch R.N. and Cook T.M. 1973. Introduction to Bacteria and Their Ecobiology. MTP.

  • Findlay R.H., Fell J.W., Coleman N.K. and Vestal J.R. 1985. Biochemical indicators of the role of fungi and thraustochytrids in mangrove detrital systems. In: Moss S.T. (ed.), The Biology of Marine Fungi. Cambridge University Press, UK, pp. 91-104.

    Google Scholar 

  • Findlay R.H., King G.M. and Watling L. 1989. Efficacy of phospholipid analysis in determining microbial biomass in sediments. Appl. Environ. Microbiol. 55: 2888-2893.

    Google Scholar 

  • Findlay R.H., Trexler M.B., Guckert J.B. and White D.C. 1990. Laboratory study of disturbance in marine sediments: response of a microbial community. Mar. Ecol. Prog. Ser. 62: 121-133.

    Google Scholar 

  • Findlay R.H. and Watling L. 1998. Seasonal variation in the structure of a marine benthic microbial community. Microbial Ecol. 36: 23-30.

    Google Scholar 

  • Haldeman D.L., Amy P.S., Ringleberg D., White D.C., Garen R.E. and Ghiorse W.C. 1995. Microbial growth and resuscitation alter community structure after perturbation. FEMS Microbiol. Ecol. 17: 27-38.

    Google Scholar 

  • Kerner M. 1993. Coupling of microbial fermentation and respiration processes in an intertidal mud flat of the Elbe Estuary. Liminol. Oceanogr. 38: 314-330.

    Google Scholar 

  • Keith-Roach M.J., Day J.P., Fifield L.K., Bryan N.D. and Livens F.R. 2000. Seasonal variations in interstitial water transuranium element concentrations. Environ. Sci. Technol. 34: 4273-4277.

    Google Scholar 

  • Lovley D.R. 1997. Microbial Fe(III) reduction in subsurface environments. FEMS Microbiol. Rev. 20: 305-313.

    Google Scholar 

  • Ludvigsen L., Albrechsten H.-J., Holst H. and Christensen T.H. 1997. Correlating phospholipid fatty acids (PLFA) ina landfill leachate polluted aquifer with biogeochemical factors by multivariate statistical methods. FEMS Microbiol. Rev. 20: 447-460.

    Google Scholar 

  • Mahalanobis P.C. 1936. On the generalised distance in statistics. Proc. Nat. Inst. India 2: 49-55.

    Google Scholar 

  • Malcolm S.J., Kershaw P.J., Lovett M.B. and Harvey B.R. 1990. The interstitial water chemistry of 239,240Pu and 241Am in the sediments of the north-east Irish Sea. Geochim. Cosmochim. Acta 54: 29-35.

    Google Scholar 

  • Morris K. 1996. Geochemical interactions of transuranic elements in intertidal areas from West Cumbria, U.K. PhD Dissertation, University of Manchester, UK.

    Google Scholar 

  • Pye K., Coleman M.L. and Duan W.M. 1997. Microbial activity and diagenesis in saltmarsh sediments, North Norfolk, England. In: Jickells T.D. and Rae J.E. (eds), Biogeochemistry of Intertidal Sediments. Cambridge University Press, UK, pp. 119-151.

    Google Scholar 

  • Rajendran N., Matsuda O., Imamura N. and Urushigawa Y. 1992. Variation in microbial biomass and community structure in sediments of eutrophic bays as determined by phospholipid ester-linked fatty acids. Appl. Environ. Microbiol. 58: 562-571.

    Google Scholar 

  • Rajendran N., Matsuda O., Urushigawa Y. and Simidu U. 1994. Characterisation of microbial community structure in the surface sediment of Osaka Bay, Japan, by phospholipid fatty acid analysis. Appl. Environ. Microbiol. 60: 248-257.

    Google Scholar 

  • Rajendran N. and Nagatomo Y. 1999. Seasonal changes in sedimentary microbial communities of two eutrophic bays as estimated by biomarkers. Hydrobiologia 393: 117-125.

    Google Scholar 

  • Stolp H. 1988. Microbial Ecology: Organisms, Habitats, Activities. Cambridge University Press, UK.

    Google Scholar 

  • Tunlid A. and White D.C. 1992. Biochemical analysis of biomass, community structure, nutritional status, and metabolic activity of microbial communities in soil. In: Stotzky G. and Bollag J.M. (eds), Soil Biochemistry. Marcel Dekker, New York, pp. 229-262.

    Google Scholar 

  • White D.C., Davis W.M., Nickels J.S., King J.D. and Bobbie R.J. 1979. Determination of the sedimentary microbial biomass by extractable lipid phosphate. Oecologia 40: 51-62.

    Google Scholar 

  • Wildung R.E. and Garland T.R. 1980. The relationship of microbial processes to the fate and behavior of transuranic elements in soils, plants, and animals. In: Hanson W.C. (ed.), Transuranic Elements in the Environment., pp. 300-325.

  • Wishart D. 1987. Clustan User Manual. 4th edn. University of St. Andrews.

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Keith-Roach, M., Bryan, N., Bardgett, R. et al. Seasonal changes in the microbial community of a salt marsh, measured by phospholipid fatty acid analysis. Biogeochemistry 60, 77–96 (2002). https://doi.org/10.1023/A:1016553225977

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