Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Article
  • Published:

Hydrophobic stabilization in T4 lysozyme determined directly by multiple substitutions of Ile 3

Abstract

Replacing the isoleucine at amino-acid position three of bacteriophage T4 lysozyme causes changes in the thermodynamic stability of the protein that are directly related to the hydrophobicity of the substituted residue. Structural analysis confirms that the hydrophobic stabilization is proportional to the reduction of the surface area accessible to solvent on folding.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Similar content being viewed by others

References

  1. Kauzmann, W. Adv. Protein Chem. 14, 1–63 (1959).

    CAS  PubMed  Google Scholar 

  2. Privalov, P. L. Adv. Protein Chem. 33, 167–241 (1979).

    CAS  PubMed  Google Scholar 

  3. Kyte, J. & Doolittle, R. F. J. molec. Biol 157, 105–132 (1982).

    CAS  PubMed  Google Scholar 

  4. Rose, G. D., Geselowitz, A. R., Lesser, G. J., Lee, R. H. & Zehfus, M. H. Science 229, 834–838 (1985).

    ADS  CAS  PubMed  Google Scholar 

  5. Eisenberg, D. & McLachlan, A. D. Nature 319, 199–203 (1986).

    ADS  CAS  PubMed  Google Scholar 

  6. Baldwin, R. L. Proc. natn. Acad. Sci. U.S.A. 83, 8069–8072 (1986).

    ADS  CAS  Google Scholar 

  7. Grütter, M. G., Hawkes, R. B. & Matthews, B. W. Nature 277, 667–669 (1979).

    ADS  PubMed  Google Scholar 

  8. Grütter, M. G., Weaver, L. H., Gray, T. M. & Matthews, B. W. in Bacteriophage T4 (eds Mathews, C. K., Kutter, E. M., Mosig, G. & Berget, P. M.) 356–360 (Am. Soc. Microbiology, Washington D.C., 1983).

    Google Scholar 

  9. Alber, T. et al. UCLA Symp. molec. cell Biol New Ser. 39, 307–318 (1986).

    Google Scholar 

  10. Hawkes, R., Grütter, M. G. & Schellman, J. J. molec. Biol. 175, 195–212 (1984).

    CAS  PubMed  Google Scholar 

  11. Fermi, G. & Penitz, M. F. in Haemoglobin and Myoglobin 97–101 (Oxford Univ. Press, Oxford, 1981).

    Google Scholar 

  12. Hecht, M. H., Sturtevant, J. M. & Sauer, R. T. Proc. natn. Acad. Sci. U.S.A. 81, 5685–5789 (1984).

    ADS  CAS  Google Scholar 

  13. Yatani, K., Ogasahara, K., Tsujita, T. & Sugino, Y. Proc. natn. Acad. Sci. U.S.A. 84, 4441–4444 (1987).

    ADS  Google Scholar 

  14. Matsumura, M., Yasumura, S. & Aiba, S. Nature 323, 356–358 (1986).

    ADS  CAS  PubMed  Google Scholar 

  15. Wells, J. A. & Powers, D. B. J. biol. Chem. 261, 6564–6570 (1986).

    CAS  PubMed  Google Scholar 

  16. Katz, B. A. & Kossiakoff, A. J. biol Chem. 261, 15480–15485 (1986).

    CAS  PubMed  Google Scholar 

  17. Bryan, P. N. et al. Proteins: Str. Funct. Genet. 1, 326–334 (1986).

    CAS  Google Scholar 

  18. Villafranca, J. E., Howell, E. E., Oatley, S. J., Xuong, N. & Kraut, J. Biochemistry 26, 2182–2189 (1987).

    CAS  PubMed  Google Scholar 

  19. Matthews, B. W., Nicholson, H. & Becktel, W. J. Proc. natn. Acad. Sci. U.S.A. 84, 6663–6667 (1987).

    ADS  CAS  Google Scholar 

  20. Alber, T. et al. Nature 330, 41–46 (1987).

    ADS  CAS  PubMed  Google Scholar 

  21. Alber, T. et al. Science 239, 631–635 (1988).

    ADS  CAS  PubMed  Google Scholar 

  22. Zoller, M. J. & Smith, M. Meth. Enzym. 100, 468–500 (1983).

    CAS  PubMed  Google Scholar 

  23. Kunkel, T. A. Proc. natn. Acad. Sci. U.S.A. 82, 488–492 (1985).

    ADS  CAS  Google Scholar 

  24. Sanger, F., Nickelsen, S. & Coulson, A. R. Proc. natn. Acad. Sci. U.S.A. 74, 5463–5467 (1977).

    ADS  CAS  Google Scholar 

  25. Muchmore, D. C., McIntosh, L. P., Russell, C. B., Anderson, D. E. & Dahlquist, F. W. Meth. Enzym. (in the press).

  26. Alber, T. & Matthews, B. W. Meth. Enzym. 154, 511–533 (1987).

    CAS  PubMed  Google Scholar 

  27. Laemmli, U. K. Nature 227, 680–685 (1970).

    ADS  CAS  PubMed  Google Scholar 

  28. Remington, S. J. et al. J. molec. Biol. 118, 81–98 (1978).

    CAS  PubMed  Google Scholar 

  29. Weaver, L. H. & Matthews, B. W. J. molec. Biol. 193, 189–199 (1987).

    CAS  PubMed  Google Scholar 

  30. Jones, T. A. in Crystallograpbic Computing (ed. Sayre, D.) 303–317 (Oxford Univ. Press, Oxford, 1982).

    Google Scholar 

  31. Tronrud, D. E., Ten Eyck, L. F. & Matthews, B. W. Acta Crystallogr. A43, 489–503 (1987).

    CAS  Google Scholar 

  32. Elwell, M. & Schellman, J. A. Biochem. Biophys. Acta 386, 309–323 (1975).

    CAS  PubMed  Google Scholar 

  33. Becktel, W. J. & Baase, W. A. Biopolymers 26, 619–623 (1987).

    CAS  PubMed  Google Scholar 

  34. Tanford, C. J. Am. chem. Soc. 84, 4240–4247 (1962).

    CAS  Google Scholar 

  35. Nozaki, Y. & Tanford, C. J. biol. Chem. 246, 2211–2217 (1971).

    CAS  PubMed  Google Scholar 

  36. Fauchere, J.-L. & Pliska, V. Eur. J. med. Chem.-Chim. Ther. 18, 369–375 (1983).

    CAS  Google Scholar 

  37. Damodaran, S. & Song, K. B. J. biol. Chem. 261, 7220–7222 (1986).

    CAS  PubMed  Google Scholar 

  38. Feudler, J. H., Nome, F. & Nagyvary, J. J. molec. Evol. 6, 215–232 (1975).

    ADS  Google Scholar 

  39. Bull, H. B. & Breese, K. Arch. Biochem. Biophys. 161, 655–670 (1974).

    Google Scholar 

  40. Wolfenden, R., Andersson, L., Cullis, P. M. & Southgate, C. C. B. Biochemistry 20, 849–855 (1981).

    CAS  PubMed  Google Scholar 

  41. Cantor, C. R. & Schimmel, P. R. Biophysical Chemistry (Freeman, New York, 1980).

    Google Scholar 

  42. Chothia, C. J. molec. Biol. 105, 1–14 (1976).

    CAS  PubMed  Google Scholar 

  43. Janin, J. Nature 171, 491–492 (1979).

    ADS  Google Scholar 

  44. Levitt, M. J. molec. Biol. 104, 59–107 (1976).

    CAS  PubMed  Google Scholar 

  45. Perry, L. J. & Wetzel, R. Science 226, 555–557 (1984).

    ADS  CAS  PubMed  Google Scholar 

  46. Lee, B. & Richards, F. M. J. molec. Biol. 55, 379–400 (1971).

    CAS  PubMed  Google Scholar 

  47. Chothia, C. Nature 248, 338–339 (1974).

    ADS  CAS  PubMed  Google Scholar 

  48. Richards, F. M. A. Rev. Biophys. Bioeng. 6, 151–176 (1977).

    CAS  Google Scholar 

  49. Muller, S., Janin, J., Lesk, A. M. & Chothia, C. J. molec. Biol. 196, 641–656 (1987).

    Google Scholar 

  50. Matthews, B. W. Biochemistry 26, 6885–6888 (1987).

    CAS  PubMed  Google Scholar 

  51. Alber, T., Dao-pin, S., Nye, J. A., Muchmore, D. C. & Matthews, B. W. Biochemistry 26, 3754–3758 (1987).

    CAS  PubMed  Google Scholar 

  52. Creighton, T. E. Biopolymers 22, 49–58 (1983).

    CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Matsumura, M., Becktel, W. & Matthews, B. Hydrophobic stabilization in T4 lysozyme determined directly by multiple substitutions of Ile 3. Nature 334, 406–410 (1988). https://doi.org/10.1038/334406a0

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/334406a0

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing