Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Article
  • Published:

Scanning from an independently specified branch point defines the 3′ splice site of mammalian introns

Abstract

During pre-messenger RNA splicing the lariat branch point in mammalian introns is specified independently of the 3′ splice site by the sequence surrounding the branch point and by an adjacent downstream polypyrimidine tract. The 3′ splice site is dispensable for spliceosome assembly and cleavage at the 5′ splice site, and is itself determined by a scanning process that recognizes the first AG located 3′ of the branch point/poly-pyrimidine tract, irrespective of distance or sequence environment.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Similar content being viewed by others

References

  1. Padgett, R. A., Grabowski, P. J., Konarska, M. M., Seiler, S. & Sharp, P. A. A. Rev. Biochem. 55, 1119–1150 (1986).

    Article  CAS  Google Scholar 

  2. Brody, E. & Abelson, J. Science 228, 963–967 (1985).

    Article  ADS  CAS  Google Scholar 

  3. Grabowski, P. J., Seller, S. R. & Sharp, P. A. Cell 42, 345–353 (1985).

    Article  CAS  Google Scholar 

  4. Maniatis, T. & Read, R. Nature 325, 673–678 (1987).

    Article  ADS  CAS  Google Scholar 

  5. Green, M. R. A. Rev. Genet. 20, 671–708 (1986).

    Article  CAS  Google Scholar 

  6. Mount, S. M. Nucleic Acids Res. 10, 459–472 (1982).

    Article  CAS  Google Scholar 

  7. Ohshima, Y. & Gotch, Y. J. molec. Biol. 195, 247–259 (1987).

    Article  CAS  Google Scholar 

  8. Zhuang, Y. & Weiner, A. M. Cell 46, 827–835 (1986).

    Article  CAS  Google Scholar 

  9. Black, D. L., Chabot, B. & Steitz, J. A. Cell 42, 737–750 (1985).

    Article  CAS  Google Scholar 

  10. Parker, R. & Guthrie, C. Cell 41, 107–118 (1985).

    Article  CAS  Google Scholar 

  11. Keller, E. B. & Noon, W. A. Proc. natn. Acad. Aci. U.S.A. 84, 7417–7420 (1984).

    Article  ADS  Google Scholar 

  12. Reed, R. & Maniatis, T. Genes Dev. 2, 1268–1276 (1988).

    Article  CAS  Google Scholar 

  13. Zhuang, Y., Goldstein, A. M. & Weiner, A. M. Proc. natn. Acad. Sci. U.S.A. 86, 2752–2756 (1989).

    Article  ADS  CAS  Google Scholar 

  14. Zhuang, Y. & Weiner, A. M. Genes Dev. 3, 1545–1552 (1989).

    Article  CAS  Google Scholar 

  15. Wu, J. & Manley, J. L. Genes Dev. 3, 1553–1561 (1989).

    Article  CAS  Google Scholar 

  16. Ruskin, B., Greene, J. M. & Green, M. R. Cell 41, 833–844 (1985).

    Article  CAS  Google Scholar 

  17. Padgett, R. A. et al. Proc. natn. Acad. Sci. 82, 8349–8353 (1985).

    Article  ADS  CAS  Google Scholar 

  18. Reed, R. & Maniatis, T. Cell 41, 95–105 (1985).

    Article  CAS  Google Scholar 

  19. Hartmuth, K. & Barta, A. Molec. cell Biol. 8, 2011–2020 (1988).

    Article  CAS  Google Scholar 

  20. Ruskin, B. & Green, M. R. Nature 317, 732–734 (1985).

    Article  ADS  CAS  Google Scholar 

  21. Frendeway, D. & Keller, W. Cell 42, 355–367 (1985).

    Article  Google Scholar 

  22. Aeibi, M., Hornig, H., Padgett, R. A., Reiser, J. & Weissman, C. Cell 47, 555–565 (1986).

    Article  Google Scholar 

  23. Lamond, A. I., Konarska, M. M., & Sharp, P. A. Genes Dev. 1, 532–543 (1987).

    Article  CAS  Google Scholar 

  24. Nelson, K. K. & Green, M. R. Genes Dev. 2, 319–329 (1988).

    Article  CAS  Google Scholar 

  25. Mayeda, A. & Ohshima, Y. Molec. cell. Biol. 8, 4484–4491 (1988).

    Article  CAS  Google Scholar 

  26. Eperon, L. P., Estibeiro, J. P. & Eperon, I. C. Nature 324, 280–282 (1986).

    Article  ADS  CAS  Google Scholar 

  27. Smith, C. W. J. & Nadal-Ginard, B. Cell 56, 749–758 (1989).

    Article  CAS  Google Scholar 

  28. Smith, C. W. J. et al. in Ceullular and Molecular Biology of Muscle Development (eds, Kedes, L. K. & Stockdale, F. E.) 573–584 (Liss, New York, 1989).

    Google Scholar 

  29. Helfman, D. M. & Ricci, W. M. Nucleic Acids Res. 17, 5633–5650 (1989).

    Article  CAS  Google Scholar 

  30. Chabot, B. Black, D. L., LeMaster, D. M. & Steitz, J. A. Science 230, 1344–1349 (1985).

    Article  ADS  CAS  Google Scholar 

  31. Rymond, B. C. & Rosbash, M. Nature 317, 735–737 (1985).

    Article  ADS  CAS  Google Scholar 

  32. Furdon, P. J. & Kole, R. Proc. natn. Acad. Sci. U.S.A. 83, 927–931 (1986).

    Article  ADS  CAS  Google Scholar 

  33. Wieringa, B., Hofer, E. & Weissmann, C. Cell 37, 915–925 (1984).

    Article  CAS  Google Scholar 

  34. Langford, C. J., Klinz, F. J., Donath, C. & Gallwitz, D. Cell 36, 645–653 (1984).

    Article  CAS  Google Scholar 

  35. Spritz, R. A. et al. Proc. natn. Acad. Sci. U.S.A. 78, 2455–2459 (1981).

    Article  ADS  CAS  Google Scholar 

  36. Nakano, T. & Suzuki, K. J. biol. Chem. 264, 5155–5158 (1989).

    CAS  PubMed  Google Scholar 

  37. Metherall, J. E., Collins, F. S., Pan, J., Weissman, S. M. & Forget, G. EMBO J. 5, 2551–2557 (1986).

    Article  CAS  Google Scholar 

  38. Fu, X-Y., Colgan, J. D. & Manley, J. L. Molec. cell Biol. 8, 3582–3590 (1988).

    Article  CAS  Google Scholar 

  39. Fu, X-Y., Ge, H. & Manley, J. L. EMBO J. 7, 809–817 (1988).

    Article  CAS  Google Scholar 

  40. Konarska, M. M., Padgett, R. A. & Sharp, P. A. Cell 42, 165–171 (1985).

    Article  CAS  Google Scholar 

  41. Halfter, H. & Gallwitz, D. Nucleic Acids Res. 16, 10413–10423 (1988).

    Article  CAS  Google Scholar 

  42. Cellini, A., Felder, E. & Rossi, J. J. EMBO J. 5, 1023–1030 (1986).

    Article  CAS  Google Scholar 

  43. Ruskin, B. & Green, M. R. Cell 43, 131–142 (1985).

    Article  CAS  Google Scholar 

  44. Reed, R. & Maniatis, T. Cell 46, 681–690 (1986).

    Article  CAS  Google Scholar 

  45. Ruskin, B., Zamore, P. D. & Green, M. R. Cell 52, 207–219 (1988).

    Article  CAS  Google Scholar 

  46. Shelley, C. S. & Baralle, F. E. Nucleic Acids Res. 15, 3787–3799 (1987).

    Article  CAS  Google Scholar 

  47. Tazi, J. et al. Cell 47, 755–766 (1986).

    Article  CAS  Google Scholar 

  48. Gerke, V. & Steitz, J. A. Cell 47, 973–984 (1986).

    Article  CAS  Google Scholar 

  49. Swanson, M. S. & Dreyfuss, G. EMBO J. 7, 3519–3529 (1988).

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Smith, C., Porro, E., Patton, J. et al. Scanning from an independently specified branch point defines the 3′ splice site of mammalian introns. Nature 342, 243–247 (1989). https://doi.org/10.1038/342243a0

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1038/342243a0

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing