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References
Das, M.K. & Dai, H.-K. BMC Bioinformatics 8, S21 (2007).
Mahony, S. & Benos, P.V. Nucleic Acids Res. 35, W253–W258 (2007).
Gupta, S., Stamatoyannopoulos, J.A., Bailey, T.L. & Noble, W.S. Genome Biol. 8, R24 (2007).
Zhao, G. et al. G3 2, 469–481 (2012).
Nettling, M. et al. BMC Bioinformatics 16, 387 (2015).
Shannon, P. et al. Genome Res. 13, 2498–2504 (2003).
Acknowledgements
We appreciate M. Enuameh and L. Ni for helpful discussion. S.A.W., M.H.B., and L.J.Z. were partly supported by National Human Genome Research Institute of the National Institutes of Health (R01HG004744-01).
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Ou, J., Wolfe, S., Brodsky, M. et al. motifStack for the analysis of transcription factor binding site evolution. Nat Methods 15, 8–9 (2018). https://doi.org/10.1038/nmeth.4555
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DOI: https://doi.org/10.1038/nmeth.4555
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