Intrinsic Rates and Activation Free Energies from Single-Molecule Pulling Experiments

Olga K. Dudko, Gerhard Hummer, and Attila Szabo
Phys. Rev. Lett. 96, 108101 – Published 15 March 2006

Abstract

We present a unified framework for extracting kinetic information from single-molecule pulling experiments at constant force or constant pulling speed. Our procedure provides estimates of not only (i) the intrinsic rate coefficient and (ii) the location of the transition state but also (iii) the free energy of activation. By analyzing simulated data, we show that the resulting rates of force-induced rupture are significantly more reliable than those obtained by the widely used approach based on Bell’s formula. We consider the uniqueness of the extracted kinetic information and suggest guidelines to avoid overinterpretation of experiments.

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  • Received 29 November 2005

DOI:https://doi.org/10.1103/PhysRevLett.96.108101

Authors & Affiliations

Olga K. Dudko1, Gerhard Hummer2, and Attila Szabo2

  • 1Mathematical and Statistical Computing Laboratory, Division of Computational Bioscience, Center for Information Technology, National Institutes of Health, Bethesda, Maryland 20892, USA
  • 2Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892-0520, USA

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Issue

Vol. 96, Iss. 10 — 17 March 2006

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