RNA and protein catalysis in group II intron splicing and mobility reactions using purified components

Biochemistry. 1999 Jul 13;38(28):9069-83. doi: 10.1021/bi982799l.

Abstract

Group II introns encode proteins with reverse transcriptase activity. These proteins also promote RNA splicing (maturase activity) and then, with the excised intron, form a site-specific DNA endonuclease that promotes intron mobility by reverse splicing into DNA followed by target DNA-primed reverse transcription. Here, we used an Escherichia coli expression system for the Lactococcus lactis group II intron Ll.LtrB to show that the intron-encoded protein (LtrA) alone is sufficient for maturase activity, and that RNP particles containing only the LtrA protein and excised intron RNA have site-specific DNA endonuclease and target DNA-primed reverse transcriptase activity. Detailed analysis of the splicing reaction indicates that LtrA is an intron-specific splicing factor that binds to unspliced precursor RNA with a K(d) of </=0.12 pM at 30 degrees C. This binding occurs in a rapid bimolecular reaction, which is followed by a slower step, presumably an RNA conformational change, required for splicing to occur. Our results constitute the first biochemical analysis of protein-dependent splicing of a group II intron and demonstrate that a single intron-encoded protein can interact with the intron RNA to carry out a coordinated series of reactions leading to splicing and mobility.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Bacterial Proteins / genetics*
  • Bacterial Proteins / isolation & purification
  • Bacterial Proteins / metabolism*
  • Catalysis
  • DNA Transposable Elements*
  • Deoxyribonucleases, Type II Site-Specific / genetics
  • Deoxyribonucleases, Type II Site-Specific / metabolism
  • Enzyme Stability / genetics
  • Escherichia coli / genetics
  • Hydrogen-Ion Concentration
  • Introns*
  • Lactococcus lactis
  • Nucleic Acid Conformation
  • RNA Splicing*
  • RNA, Bacterial / chemistry
  • RNA, Bacterial / genetics
  • RNA, Bacterial / metabolism*
  • RNA-Binding Proteins / metabolism
  • RNA-Directed DNA Polymerase / genetics
  • RNA-Directed DNA Polymerase / metabolism
  • Recombinant Proteins / biosynthesis
  • Recombinant Proteins / isolation & purification
  • Recombinant Proteins / metabolism
  • Ribonucleoproteins / genetics
  • Ribonucleoproteins / metabolism
  • Sodium Chloride / chemistry
  • Substrate Specificity / genetics

Substances

  • Bacterial Proteins
  • DNA Transposable Elements
  • LtrB protein, Lactococcus lactis
  • RNA, Bacterial
  • RNA-Binding Proteins
  • Recombinant Proteins
  • Ribonucleoproteins
  • Sodium Chloride
  • LtrA protein, Lactococcus lactis
  • RNA-Directed DNA Polymerase
  • Deoxyribonucleases, Type II Site-Specific