A ratchet-like inter-subunit reorganization of the ribosome during translocation

Nature. 2000 Jul 20;406(6793):318-22. doi: 10.1038/35018597.

Abstract

The ribosome is a macromolecular assembly that is responsible for protein biosynthesis following genetic instructions in all organisms. It is composed of two unequal subunits: the smaller subunit binds messenger RNA and the anticodon end of transfer RNAs, and helps to decode the mRNA; and the larger subunit interacts with the amino-acid-carrying end of tRNAs and catalyses the formation of the peptide bonds. After peptide-bond formation, elongation factor G (EF-G) binds to the ribosome, triggering the translocation of peptidyl-tRNA from its aminoacyl site to the peptidyl site, and movement of mRNA by one codon. Here we analyse three-dimensional cryo-electron microscopy maps of the Escherichia coli 70S ribosome in various functional states, and show that both EF-G binding and subsequent GTP hydrolysis lead to ratchet-like rotations of the small 30S subunit relative to the large 50S subunit. Furthermore, our finding indicates a two-step mechanism of translocation: first, relative rotation of the subunits and opening of the mRNA channel following binding of GTP to EF-G; and second, advance of the mRNA/(tRNA)2 complex in the direction of the rotation of the 30S subunit, following GTP hydrolysis.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Biological Transport
  • Cryoelectron Microscopy
  • Escherichia coli
  • Guanosine Triphosphate / metabolism
  • Hydrolysis
  • Macromolecular Substances
  • Models, Molecular
  • Molecular Conformation
  • Peptide Elongation Factor G / metabolism
  • RNA, Messenger / metabolism
  • RNA, Transfer / metabolism
  • Ribosomes / chemistry
  • Ribosomes / metabolism
  • Ribosomes / ultrastructure*

Substances

  • Macromolecular Substances
  • Peptide Elongation Factor G
  • RNA, Messenger
  • Guanosine Triphosphate
  • RNA, Transfer