Analysis of the spacing between the two palindromes of activation sequence-1 with respect to binding to different TGA factors and transcriptional activation potential

Nucleic Acids Res. 2002 Feb 1;30(3):775-81. doi: 10.1093/nar/30.3.775.

Abstract

In higher plants, activation sequence-1 (as-1) of the cauliflower mosaic virus 35S promoter mediates both salicylic acid- and auxin-inducible transcriptional activation. Originally found in viral and T-DNA promoters, as-1-like elements are also functional elements of plant promoters activated in the course of a defence response upon pathogen attack. as-1-like elements are characterised by two imperfect palindromes with the palindromic centres being spaced by 12 bp. They are recognised by plant nuclear as-1-binding factor ASF-1, the major component of which is basic/leucine zipper (bZIP) protein TGA2.2 (approximately 80%) in Nicotiana tabacum. In electrophoretic mobility shift assays, ASF-1 as well as bZIP proteins TGA2.2, TGA2.1 and TGA1a showed a 3-10-fold reduced binding affinity to mutant as-1 elements encoding insertions of 2, 4, 6, 8 or 10 bp between the palindromes, respectively. This correlated with a 5-10-fold reduction in transcriptional activation from these elements in transient expression assays. Although ASF-1 and TGA factors bound efficiently to a mutant element carrying a 2 bp deletion between the palindromes [as-1/(-2)], the latter was strongly compromised with respect to mediating gene expression in vivo. A fusion protein consisting of TGA2.2 and a constitutive activation domain mediated transactivation from as-1/(-2) demonstrating binding of TGA factors in vivo. We therefore conclude that both DNA binding and transactivation require optimal positioning of TGA factors on the as-1 element.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Basic-Leucine Zipper Transcription Factors
  • Binding Sites
  • DNA, Viral / chemistry
  • DNA, Viral / genetics*
  • DNA, Viral / metabolism*
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / metabolism*
  • Electrophoretic Mobility Shift Assay
  • Gene Expression Regulation, Viral
  • Genes, Reporter
  • Nicotiana / genetics
  • Nicotiana / metabolism*
  • Nicotiana / virology
  • Nuclear Proteins*
  • Plant Proteins / chemistry
  • Plant Proteins / metabolism
  • Plant Viruses / genetics*
  • Promoter Regions, Genetic / genetics
  • Protein Binding
  • Protein Structure, Tertiary
  • Response Elements / genetics*
  • Sequence Alignment
  • Sequence Deletion / genetics
  • Substrate Specificity
  • Thermodynamics
  • Transcription Factors / chemistry
  • Transcription Factors / metabolism*
  • Transcriptional Activation*

Substances

  • Basic-Leucine Zipper Transcription Factors
  • DNA, Viral
  • DNA-Binding Proteins
  • Nuclear Proteins
  • Plant Proteins
  • TGA1a protein, Nicotiana tabacum
  • Transcription Factors
  • HBP-1b protein, plant