Solubilization of trichloroacetic acid (TCA) precipitated microbial proteins via naOH for two-dimensional electrophoresis

J Proteome Res. 2003 Jan-Feb;2(1):89-93. doi: 10.1021/pr025541x.

Abstract

In preparing intracellular microbial samples for one- or two-dimensional electrophoresis, trichloroacetic acid (TCA) precipitation is frequently used to remove interfering compounds. Solubilization of TCA precipitate typically requires the addition of a number of chaotropes or detergents, in a multistep process, that requires hours to carry out. In this study, a simple, rapid, one-step method to solubilize TCA precipitated proteins is presented. Precipitated proteins are pretreated with 0.2 M NaOH for less than 5 min, followed by addition of standard sample solubilization buffer (SSSB). When compared to solubilization with SSSB alone, NaOH pretreatment of TCA-precipitated intracellular protein from Aspergillus oryzae and Escherichia coli shows an approximate 5-fold increase in soluble protein. In addition, two-dimensional gel electrophoresis on resolubilized proteins shows an equivalent number of proteins in samples with and without NaOH pretreatment.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Aspergillus oryzae / metabolism
  • Electrophoresis, Gel, Two-Dimensional / methods*
  • Escherichia coli / metabolism
  • Peptides / chemistry
  • Proteins / analysis
  • Proteins / chemistry*
  • Proteome*
  • Sodium Hydroxide / pharmacology
  • Time Factors
  • Trichloroacetic Acid / chemistry*
  • Trichloroacetic Acid / pharmacology*

Substances

  • Peptides
  • Proteins
  • Proteome
  • Sodium Hydroxide
  • Trichloroacetic Acid