Catalysis by nucleoside hydrolases

Curr Opin Struct Biol. 2003 Dec;13(6):731-8. doi: 10.1016/j.sbi.2003.10.002.

Abstract

Nucleoside hydrolases cleave the N-glycosidic bond of ribonucleosides. Because of their vital role in the protozoan purine salvage pathway, nucleoside hydrolases from parasitic protozoa in particular have been studied extensively by X-ray crystallography, kinetic methods and site-directed mutagenesis. An elaborate network of conserved interactions between the metalloenzyme and the ribose enables steric and electrostatic stabilisation of the oxocarbenium-ion-like transition state. Activation of the leaving group by protonation before the formation of the transition state is a recurring catalytic strategy of enzymes that cleave N-glycosidic bonds. However, the mechanisms underlying leaving group activation are still the subject of debate for the nucleoside hydrolases.

Publication types

  • Review

MeSH terms

  • Binding Sites
  • Catalysis
  • Enzyme Activation
  • N-Glycosyl Hydrolases / chemistry*
  • Protein Binding
  • Protein Conformation
  • Protein Folding
  • Ribose / chemistry*
  • Structural Homology, Protein
  • Structure-Activity Relationship
  • Substrate Specificity

Substances

  • Ribose
  • N-Glycosyl Hydrolases