RPG: the Ribosomal Protein Gene database

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D168-70. doi: 10.1093/nar/gkh004.

Abstract

RPG (http://ribosome.miyazaki-med.ac.jp/) is a new database that provides detailed information about ribosomal protein (RP) genes. It contains data from humans and other organisms, including Drosophila melanogaster, Caenorhabditis elegans, Saccharo myces cerevisiae, Methanococcus jannaschii and Escherichia coli. Users can search the database by gene name and organism. Each record includes sequences (genomic, cDNA and amino acid sequences), intron/exon structures, genomic locations and information about orthologs. In addition, users can view and compare the gene structures of the above organisms and make multiple amino acid sequence alignments. RPG also provides information on small nucleolar RNAs (snoRNAs) that are encoded in the introns of RP genes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Computational Biology
  • Databases, Genetic*
  • Exons
  • Genomics
  • Humans
  • Internet
  • Introns
  • Molecular Sequence Data
  • RNA, Small Nucleolar / genetics
  • Ribosomal Proteins / chemistry*
  • Ribosomal Proteins / genetics*

Substances

  • RNA, Small Nucleolar
  • Ribosomal Proteins