Structural analysis of cooperative RNA binding by the La motif and central RRM domain of human La protein

Nat Struct Mol Biol. 2004 Apr;11(4):323-9. doi: 10.1038/nsmb747. Epub 2004 Mar 7.

Abstract

The La protein is a conserved component of eukaryotic ribonucleoprotein complexes that binds the 3' poly(U)-rich elements of nascent RNA polymerase III (pol III) transcripts to assist folding and maturation. This specific recognition is mediated by the N-terminal domain (NTD) of La, which comprises a La motif and an RNA recognition motif (RRM). We have determined the solution structures of both domains and show that the La motif adopts an alpha/beta fold that comprises a winged-helix motif elaborated by the insertion of three helices. Chemical shift mapping experiments show that these insertions are involved in RNA interactions. They further delineate a distinct surface patch on each domain-containing both basic and aromatic residues-that interacts with RNA and accounts for the cooperative binding of short oligonucleotides exhibited by the La NTD.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Autoantigens
  • Binding Sites
  • Conserved Sequence
  • Humans
  • Magnetic Resonance Spectroscopy / methods
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • RNA / genetics
  • RNA / metabolism*
  • Ribonucleoproteins / chemistry*
  • Ribonucleoproteins / genetics
  • Ribonucleoproteins / metabolism*
  • SS-B Antigen
  • Sequence Alignment
  • Sequence Homology, Amino Acid

Substances

  • Autoantigens
  • Ribonucleoproteins
  • RNA

Associated data

  • PDB/1S79
  • PDB/1S7A