Probing pockets S2-S4' of the gamma-secretase active site with (hydroxyethyl)urea peptidomimetics

Bioorg Med Chem Lett. 2004 Apr 19;14(8):1935-8. doi: 10.1016/j.bmcl.2004.01.077.

Abstract

(Hydroxyethyl)urea peptidomimetics are potent inhibitors of gamma-secretase that are accessible in a few synthetic steps. Systematic alteration of P2-P4' revealed that the corresponding S2-S4' active site pockets accommodate a variety of substituents, consistent with the fact that this protease cleaves a variety of single-pass membrane proteins; however, phenylalanine is not well tolerated at P2'. A compound spanning P2-P3' was identified as a low nM inhibitor of gamma-secretase activity both in cells and under cell-free conditions.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amyloid Precursor Protein Secretases
  • Animals
  • Binding Sites / drug effects
  • Biomimetic Materials / chemical synthesis
  • Biomimetic Materials / chemistry
  • Biomimetic Materials / pharmacology*
  • CHO Cells
  • Cricetinae
  • Endopeptidases / drug effects
  • Endopeptidases / metabolism*
  • Hydroxyurea / analogs & derivatives*
  • Hydroxyurea / chemical synthesis
  • Hydroxyurea / pharmacology*
  • Molecular Structure
  • Peptide Fragments / chemical synthesis
  • Peptide Fragments / pharmacology*
  • Protease Inhibitors / chemical synthesis
  • Protease Inhibitors / chemistry
  • Protease Inhibitors / pharmacology*
  • Structure-Activity Relationship

Substances

  • Peptide Fragments
  • Protease Inhibitors
  • Amyloid Precursor Protein Secretases
  • Endopeptidases
  • Hydroxyurea