The architecture of the binding site in redox protein complexes: implications for fast dissociation

Proteins. 2004 May 15;55(3):603-12. doi: 10.1002/prot.20043.

Abstract

Interprotein electron transfer is characterized by protein interactions on the millisecond time scale. Such transient encounters are ensured by extremely high rates of complex dissociation. Computational analysis of the available crystal structures of redox protein complexes reveals features of the binding site that favor fast dissociation. In particular, the complex interface is shown to have low geometric complementarity and poor packing. These features are consistent with the necessity for fast dissociation since the absence of close packing facilitates solvation of the interface and disruption of the complex.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids / chemistry
  • Binding Sites
  • Electron Transport
  • Kinetics
  • Macromolecular Substances
  • Models, Molecular
  • Molecular Structure
  • Oxidation-Reduction
  • Protein Conformation
  • Proteins / chemistry*
  • Proteins / metabolism
  • Static Electricity

Substances

  • Amino Acids
  • Macromolecular Substances
  • Proteins