Cross-catalytic replication of an RNA ligase ribozyme

Chem Biol. 2004 Nov;11(11):1505-12. doi: 10.1016/j.chembiol.2004.08.021.

Abstract

A self-replicating RNA ligase ribozyme was converted to a cross-catalytic format whereby two ribozymes direct each other's synthesis from a total of four component substrates. Each ribozyme binds two RNA substrates and catalyzes their ligation to form the opposing ribozyme. The two ribozymes are not perfectly complementary, as is the case for replicating nucleic acid genomes in biology. Rather, the ribozymes contain both template elements, which are complementary, and catalytic elements, which are identical. The specificity of the template interactions allows the cross-catalytic pathway to dominate over all other reaction pathways. As the concentration of the two ribozymes increases, the rate of formation of additional ribozyme molecules increases, consistent with the overall autocatalytic behavior of the reaction system.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Base Sequence
  • Drug Design
  • Molecular Sequence Data
  • Protein Structure, Secondary
  • RNA Ligase (ATP) / biosynthesis*
  • RNA, Catalytic / biosynthesis*
  • RNA, Catalytic / classification
  • RNA, Catalytic / genetics

Substances

  • RNA, Catalytic
  • RNA Ligase (ATP)