Do all backbone polar groups in proteins form hydrogen bonds?

Protein Sci. 2005 Jul;14(7):1911-7. doi: 10.1110/ps.051454805. Epub 2005 Jun 3.

Abstract

Evidence from proteins and peptides supports the conclusion that intrapeptide hydrogen bonds stabilize the folded form of proteins. Paradoxically, evidence from small molecules supports the opposite conclusion, that intrapeptide hydrogen bonds are less favorable than peptide-water hydrogen bonds. A related issue-often lost in this debate about comparing peptide-peptide to peptide- water hydrogen bonds-involves the energetic cost of an unsatisfied hydrogen bond. Here, experiment and theory agree that breaking a hydrogen bond costs between 5 and 6 kcal/mol. Accordingly, the likelihood of finding an unsatisfied hydrogen bond in a protein is insignificant. This realization establishes a powerful rule for evaluating protein conformations.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Hydrogen Bonding
  • Hydrophobic and Hydrophilic Interactions
  • Peptide Fragments / chemistry*
  • Peptide Fragments / metabolism
  • Protein Conformation*
  • Proteins / chemistry*
  • Proteins / metabolism

Substances

  • Peptide Fragments
  • Proteins