Molecular diversity of coronaviruses in bats

Virology. 2006 Jul 20;351(1):180-7. doi: 10.1016/j.virol.2006.02.041. Epub 2006 May 2.

Abstract

The existence of coronaviruses in bats is unknown until the recent discovery of bat-SARS-CoV in Chinese horseshoe bats and a novel group 1 coronavirus in other bat species. Among 309 bats of 13 species captured from 20 different locations in rural areas of Hong Kong over a 16-month period, coronaviruses were amplified from anal swabs of 37 (12%) bats by RT-PCR. Phylogenetic analysis of RNA-dependent-RNA-polymerase (pol) and helicase genes revealed six novel coronaviruses from six different bat species, in addition to the two previously described coronaviruses. Among the six novel coronaviruses, four were group 1 coronaviruses (bat-CoV HKU2 from Chinese horseshoe bat, bat-CoV HKU6 from rickett's big-footed bat, bat-CoV HKU7 from greater bent-winged bat and bat-CoV HKU8 from lesser bent-winged bat) and two were group 2 coronaviruses (bat-CoV HKU4 from lesser bamboo bats and bat-CoV HKU5 from Japanese pipistrelles). An astonishing diversity of coronaviruses was observed in bats.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Chiroptera / virology*
  • Coronaviridae / classification
  • Coronaviridae / genetics*
  • Coronaviridae / isolation & purification
  • Genetic Variation / genetics*
  • Molecular Epidemiology
  • Molecular Sequence Data
  • Phylogeny

Associated data

  • GENBANK/DQ074652
  • GENBANK/DQ249213
  • GENBANK/DQ249214
  • GENBANK/DQ249215
  • GENBANK/DQ249216
  • GENBANK/DQ249217
  • GENBANK/DQ249218
  • GENBANK/DQ249219
  • GENBANK/DQ249221
  • GENBANK/DQ249224
  • GENBANK/DQ249226
  • GENBANK/DQ249228
  • GENBANK/DQ249235
  • GENBANK/DQ249236
  • GENBANK/DQ249237
  • GENBANK/DQ249238
  • GENBANK/DQ249239
  • GENBANK/DQ249240
  • GENBANK/DQ249241
  • GENBANK/DQ249242
  • GENBANK/DQ249243
  • GENBANK/DQ249244
  • GENBANK/DQ249246
  • GENBANK/DQ249247
  • GENBANK/DQ249249
  • GENBANK/DQ364567