Protein mechanics: a route from structure to function

J Biosci. 2007 Aug;32(5):891-8. doi: 10.1007/s12038-007-0089-x.

Abstract

In order to better understand the mechanical properties of proteins, we have developed simulation tools which enable these properties to be analysed on a residue-by-residue basis. Although these calculations are relatively expensive with all-atom protein models, good results can be obtained much faster using coarse-grained approaches. The results show that proteins are surprisingly heterogeneous from a mechanical point of view and that functionally important residues often exhibit unusual mechanical behaviour. This finding offers a novel means for detecting functional sites and also potentially provides a route for understanding the links between structure and function in more general terms.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Animals
  • Binding Sites
  • Computational Biology / methods*
  • Models, Chemical*
  • Models, Molecular*
  • Protein Binding
  • Proteins / chemistry*
  • Proteins / physiology*
  • Structure-Activity Relationship

Substances

  • Proteins