Novel ecological niche of Cetobacterium somerae, an anaerobic bacterium in the intestinal tracts of freshwater fish

Lett Appl Microbiol. 2008 Jan;46(1):43-8. doi: 10.1111/j.1472-765X.2007.02258.x. Epub 2007 Oct 16.

Abstract

Aims: This study was conducted to clarify the taxonomic status of Bacteroides type A strains with high vitamin B(12)-producing ability that is widely distributed in the intestinal tracts of freshwater fish.

Methods and results: Seventeen strains of Bacteroides type A isolated from five fish species were all rod-shaped and gram-negative. The strains were positive for esculin hydrolysis, nitrate reduction, resistance to bile, acid phosphatase, and negative for the production of catalase and urease and the susceptibility to vancomycin. The G+C content of DNA from the 17 strains was 29 x 1-31 x 9 mol%, and 16S rDNA sequence analysis revealed a close phylogenetic relationship between Bacteroides type A strains and Cetobacterium somerae sharing 99 x 7-100% sequence similarity. In addition, strains were capable of producing vitamin B(12) at a rate of 1 x 82-13 x 98 ng ml(-1) in 48 h.

Conclusion: Phenotypic and phylogenetic characteristics indicated that all isolates previously classified as Bacteroides type A strains belong to C. someare.

Significance and impact of the study: This study provided the important finding of novel niche of vancomycin-resistant bacteria such as C. somerae in the intestinal tract of freshwater fish.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bacteroides / classification*
  • Bacteroides / genetics
  • Bacteroides / isolation & purification
  • Bacteroides / metabolism
  • Base Composition
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / genetics
  • Fishes / microbiology*
  • Fresh Water*
  • Fusobacteria / classification*
  • Fusobacteria / genetics
  • Fusobacteria / isolation & purification
  • Fusobacteria / metabolism
  • Intestines / microbiology*
  • Japan
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Vitamin B 12 / biosynthesis

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Ribosomal, 16S
  • Vitamin B 12