Molecular code for transmembrane-helix recognition by the Sec61 translocon

Nature. 2007 Dec 13;450(7172):1026-30. doi: 10.1038/nature06387.

Abstract

Transmembrane alpha-helices in integral membrane proteins are recognized co-translationally and inserted into the membrane of the endoplasmic reticulum by the Sec61 translocon. A full quantitative description of this phenomenon, linking amino acid sequence to membrane insertion efficiency, is still lacking. Here, using in vitro translation of a model protein in the presence of dog pancreas rough microsomes to analyse a large number of systematically designed hydrophobic segments, we present a quantitative analysis of the position-dependent contribution of all 20 amino acids to membrane insertion efficiency, as well as of the effects of transmembrane segment length and flanking amino acids. The emerging picture of translocon-mediated transmembrane helix assembly is simple, with the critical sequence characteristics mirroring the physical properties of the lipid bilayer.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Dogs
  • Escherichia coli / enzymology
  • Hydrophobic and Hydrophilic Interactions
  • Lipid Bilayers / metabolism*
  • Membrane Proteins / chemistry*
  • Membrane Proteins / metabolism*
  • Microsomes / metabolism
  • Pancreas / cytology
  • Protein Conformation
  • SEC Translocation Channels
  • Serine Endopeptidases / chemistry
  • Serine Endopeptidases / metabolism
  • Substrate Specificity
  • Thermodynamics

Substances

  • Lipid Bilayers
  • Membrane Proteins
  • SEC Translocation Channels
  • Serine Endopeptidases
  • type I signal peptidase