Post-transcriptional regulation of NifA expression by Hfq and RNase E complex in Rhizobium leguminosarum bv. viciae

Acta Biochim Biophys Sin (Shanghai). 2009 Sep;41(9):719-30. doi: 10.1093/abbs/gmp060.

Abstract

NifA is the general transcriptional activator of nitrogen fixation genes in diazotrophic bacteria. In Rhizobium leguminosarum bv. viciae strain 8401/pRL1JI, the NifA gene is part of a gene cluster (fixABCXNifAB). In this study, results showed that in R. leguminosarum bv.viciae 8401/pRL1JI, host factor required (Hfq), and RNase E were involved in the post-transcriptional regulation of NifA expression. It was found that Hfq-dependent RNase E cleavage of NifA mRNA was essential for NifA translation. The cleavage site is located at 32 nucleotides upstream of the NifA translational start codon. A possible explanation based on predicted RNA secondary structure of the NifA 5'-untranslated region was that the cleavage made ribosome-binding sites accessible for translation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / metabolism*
  • Endoribonucleases / metabolism*
  • Escherichia coli Proteins / metabolism*
  • Gene Expression Regulation, Bacterial / physiology*
  • Host Factor 1 Protein / metabolism*
  • Rhizobium / physiology*
  • Signal Transduction / physiology*
  • Transcription Factors / metabolism*
  • Transcriptional Activation / physiology*

Substances

  • Bacterial Proteins
  • Escherichia coli Proteins
  • Hfq protein, E coli
  • Host Factor 1 Protein
  • NifA protein, Bacteria
  • Transcription Factors
  • Endoribonucleases
  • ribonuclease E