CellClassifier: supervised learning of cellular phenotypes

Pauli Rämö; Raphael Sacher; Berend Snijder; Boris Begemann; Lucas Pelkmans

doi:10.1093/bioinformatics/btp524

CellClassifier: supervised learning of cellular phenotypes

Bioinformatics. 2009 Nov 15;25(22):3028-30. doi: 10.1093/bioinformatics/btp524. Epub 2009 Sep 2.

Authors

Pauli Rämö¹, Raphael Sacher, Berend Snijder, Boris Begemann, Lucas Pelkmans

Affiliation

¹ Institute of Molecular Systems Biology, ETH Zürich, HPT E71, Wolfgang Pauli-Str. 16, 8093 Zürich, Switzerland.

PMID: 19729371
DOI: 10.1093/bioinformatics/btp524

Abstract

CellClassifier is a tool for classifying single-cell phenotypes in microscope images. It includes several unique and user-friendly features for classification using multiclass support vector machines

Availability: Source code, user manual and SaveObjectSegmentation CellProfiler module available for download at www.cellclassifier.ethz.ch under the GPL license (implemented in Matlab).

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Computational Biology / methods*
Internet
Phenotype*
Proteome
Software*

Substances

Proteome