Systematic analysis of helical protein interfaces reveals targets for synthetic inhibitors

ACS Chem Biol. 2010 Oct 15;5(10):919-23. doi: 10.1021/cb1001747.

Abstract

Synthetic inhibitors of protein-protein interactions are being discovered despite the inherent challenge in targeting large contact surfaces with small molecules. An analysis of available examples identifies common features of complexes that make them tractable for small molecules. We deduced that relative disposition and energetic contributions of "hot spot" residues provide a predictive scale for the potential of protein-protein interactions to be inhibited by small molecules. On the basis of this model, we analyzed the full set of helical protein interfaces in the Protein Data Bank to identify those that are potentially suitable candidates for synthetic ligands.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Binding Sites / drug effects
  • Databases, Protein
  • Humans
  • Models, Molecular
  • Protein Binding / drug effects
  • Protein Structure, Secondary / drug effects
  • Proteins / antagonists & inhibitors*
  • Proteins / chemistry*
  • Proteins / metabolism
  • Small Molecule Libraries / chemistry
  • Small Molecule Libraries / pharmacology*
  • Thermodynamics

Substances

  • Proteins
  • Small Molecule Libraries