Control of eukaryotic gene expression: gene loops and transcriptional memory

Adv Enzyme Regul. 2011;51(1):118-25. doi: 10.1016/j.advenzreg.2010.10.001. Epub 2010 Oct 29.

Abstract

Gene loops are dynamic structures that juxtapose promoter–terminator regions of Pol II-transcribed genes. Although first described in yeast, gene loops have now been identified in yeast and mammalian cells. Looping requires components of the transcription preinitiation complex, the pre-mRNA 30-end processing machinery, and subunits of the nuclear pore complex. Loop formation is transcription-dependent, but neither basal nor activated transcription requires looping. Rather, looping appears to affect cellular memory of recent transcriptional activity, enabling a more rapid response to subsequent stimuli. The nuclear pore has been implicated in both memory and looping. Our working model is that loops are formed and/or maintained at the nuclear pore to facilitate hand-off of Pol II form the terminator to the promoter, thereby bypassing Pol II recruitment as the rate-limiting step in reactivation of transcription. Involvement of the nuclear pore also suggests that looping might facilitate mRNA export to the cytoplasm. The technology now exists to test these ideas.

Publication types

  • Research Support, N.I.H., Extramural
  • Review

MeSH terms

  • Chromosomes / metabolism
  • DNA Polymerase II / metabolism
  • Gene Expression*
  • Genome
  • Nucleic Acid Conformation*
  • Regulatory Sequences, Nucleic Acid
  • Transcription Factors / metabolism
  • Transcription, Genetic*
  • Transcriptional Activation*

Substances

  • Transcription Factors
  • DNA Polymerase II