Coarse-grained dynamics of protein synthesis in a cell-free system

Phys Rev Lett. 2011 Jan 28;106(4):048104. doi: 10.1103/PhysRevLett.106.048104. Epub 2011 Jan 24.

Abstract

A complete gene expression reaction is reconstituted in a cell-free system comprising the entire endogenous transcription, translation, as well as mRNA and protein degradation machinery of E. coli. In dissecting the major reaction steps, we derive a coarse-grained enzymatic description of biosynthesis and degradation, from which ten relevant rate constants and concentrations are determined. Governed by zeroth-order degradation, protein expression follows a sharp transition from undetectable levels to constant-rate accumulation, without reaching steady state.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Cell-Free System / metabolism*
  • Escherichia coli / cytology
  • Escherichia coli / metabolism
  • Escherichia coli Proteins / biosynthesis*
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Models, Biological*
  • Protein Biosynthesis*
  • RNA, Messenger / genetics
  • Transcription, Genetic

Substances

  • Escherichia coli Proteins
  • RNA, Messenger