kinITC: a new method for obtaining joint thermodynamic and kinetic data by isothermal titration calorimetry

J Am Chem Soc. 2012 Jan 11;134(1):559-65. doi: 10.1021/ja209057d. Epub 2011 Dec 16.

Abstract

Isothermal titration calorimetry (ITC) is the method of choice for obtaining thermodynamic data on a great variety of systems. Here we show that modern ITC apparatus and new processing methods allow researchers to obtain a complete kinetic description of systems more diverse than previously thought, ranging from simple ligand binding to complex RNA folding. We illustrate these new features with a simple case (HIV-1 reverse transcriptase/inhibitor interaction) and with the more complex case of the folding of a riboswitch triggered by the binding of its ligand. The originality of the new kinITC method lies in its ability to dissect, both thermodynamically and kinetically, the two components: primary ligand binding and subsequent RNA folding. We are not aware of another single method that can yield, in a simple way, such deep insight into a composite process. Our study also rationalizes common observations from daily ITC use.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Calorimetry / methods*
  • HIV Reverse Transcriptase / antagonists & inhibitors
  • HIV Reverse Transcriptase / metabolism
  • HIV-1 / enzymology
  • Kinetics
  • Nevirapine / metabolism
  • Reverse Transcriptase Inhibitors / metabolism
  • Riboswitch
  • Statistics as Topic / methods*
  • Thermodynamics
  • Thiamine Pyrophosphate / metabolism

Substances

  • Reverse Transcriptase Inhibitors
  • Riboswitch
  • Nevirapine
  • reverse transcriptase, Human immunodeficiency virus 1
  • HIV Reverse Transcriptase
  • Thiamine Pyrophosphate