Collaborative coupling between polymerase and helicase for leading-strand synthesis

Nucleic Acids Res. 2012 Jul;40(13):6187-98. doi: 10.1093/nar/gks254. Epub 2012 Mar 20.

Abstract

Rapid and processive leading-strand DNA synthesis in the bacteriophage T4 system requires functional coupling between the helicase and the holoenzyme, consisting of the polymerase and trimeric clamp loaded by the clamp loader. We investigated the mechanism of this coupling on a DNA hairpin substrate manipulated by a magnetic trap. In stark contrast to the isolated enzymes, the coupled system synthesized DNA at the maximum rate without exhibiting fork regression or pauses. DNA synthesis and unwinding activities were coupled at low forces, but became uncoupled displaying separate activities at high forces or low dNTP concentration. We propose a collaborative model in which the helicase releases the fork regression pressure on the holoenzyme allowing it to adopt a processive polymerization conformation and the holoenzyme destabilizes the first few base pairs of the fork thereby increasing the efficiency of helicase unwinding. The model implies that both enzymes are localized at the fork, but does not require a specific interaction between them. The model quantitatively reproduces homologous and heterologous coupling results under various experimental conditions.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Bacillus Phages / enzymology
  • Bacteriophage T4 / enzymology
  • DNA / biosynthesis*
  • DNA Helicases / metabolism*
  • DNA Replication
  • DNA-Binding Proteins / metabolism
  • DNA-Directed DNA Polymerase / metabolism*
  • Exodeoxyribonucleases / metabolism
  • Holoenzymes / metabolism
  • Multienzyme Complexes / metabolism
  • Viral Proteins / metabolism*

Substances

  • DNA-Binding Proteins
  • Holoenzymes
  • Multienzyme Complexes
  • Viral Proteins
  • gene 41 protein, Enterobacteria phage T4
  • gene 43 protein, Enterobacteria phage T4
  • gp32 protein, Enterobacteria phage T4
  • DNA
  • DNA synthesome
  • bacteriophage T7 induced DNA polymerase
  • DNA-Directed DNA Polymerase
  • Exodeoxyribonucleases
  • DNA Helicases