The crystal structure of the extracellular 11-heme cytochrome UndA reveals a conserved 10-heme motif and defined binding site for soluble iron chelates

Structure. 2012 Jul 3;20(7):1275-84. doi: 10.1016/j.str.2012.04.016. Epub 2012 Jun 7.

Abstract

Members of the genus Shewanella translocate deca- or undeca-heme cytochromes to the external cell surface thus enabling respiration using extracellular minerals and polynuclear Fe(III) chelates. The high resolution structure of the first undeca-heme outer membrane cytochrome, UndA, reveals a crossed heme chain with four potential electron ingress/egress sites arranged within four domains. Sequence and structural alignment of UndA and the deca-heme MtrF reveals the extra heme of UndA is inserted between MtrF hemes 6 and 7. The remaining UndA hemes can be superposed over the heme chain of the decaheme MtrF, suggesting that a ten heme core is conserved between outer membrane cytochromes. The UndA structure has also been crystallographically resolved in complex with substrates, an Fe(III)-nitrilotriacetate dimer or an Fe(III)-citrate trimer. The structural resolution of these UndA-Fe(III)-chelate complexes provides a rationale for previous kinetic measurements on UndA and other outer membrane cytochromes.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Bacterial Outer Membrane Proteins / chemistry*
  • Bacterial Outer Membrane Proteins / genetics
  • Bacterial Outer Membrane Proteins / metabolism
  • Binding Sites
  • Conserved Sequence
  • Crystallography, X-Ray
  • Cytochromes / chemistry*
  • Cytochromes / genetics
  • Cytochromes / metabolism
  • Ferric Compounds / chemistry*
  • Heme / chemistry*
  • Iron Chelating Agents / chemistry*
  • Models, Molecular
  • Molecular Sequence Data
  • Nitrilotriacetic Acid / analogs & derivatives*
  • Nitrilotriacetic Acid / chemistry
  • Plasmids
  • Protein Binding
  • Protein Structure, Secondary
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Shewanella / chemistry*
  • Shewanella / enzymology
  • Shewanella / genetics
  • Solubility
  • Transformation, Bacterial

Substances

  • Bacterial Outer Membrane Proteins
  • Cytochromes
  • Ferric Compounds
  • Iron Chelating Agents
  • Heme
  • ferric citrate
  • Nitrilotriacetic Acid
  • ferric nitrilotriacetate