Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria

Plant J. 2012 Nov;72(3):450-60. doi: 10.1111/j.1365-313X.2012.05091.x. Epub 2012 Aug 14.

Abstract

Pentatricopeptide repeat (PPR) proteins are involved in the modification of organelle transcripts. In this study, we investigated the molecular function in rice of the mitochondrial PPR-encoding gene MITOCHONDRIAL PPR25 (MPR25), which belongs to the E subgroup of the PPR family. A Tos17 knockout mutant of MPR25 exhibited growth retardation and pale-green leaves with reduced chlorophyll content during the early stages of plant development. The photosynthetic rate in the mpr25 mutant was significantly decreased, especially under strong light conditions, although the respiration rate did not differ from that of wild-type plants. MPR25 was preferentially expressed in leaves. FLAG-tagged MPR25 accumulated in mitochondria but not in chloroplasts. Direct sequencing revealed that the mpr25 mutant fails to edit a C-U RNA editing site at nucleotide 1580 of nad5, which encodes a subunit of complex I (NADH dehydrogenase) of the respiratory chain in mitochondria. RNA editing of this site is responsible for a change in amino acid from serine to leucine. Recombinant MPR25 directly interacted with the proximal region of the editing site of nad5 transcripts. However, the NADH dehydrogenase activity of complex I was not affected in the mutant. By contrast, genes encoding alternative NADH dehydrogenases and alternative oxidase were up-regulated. The mpr25 mutant may therefore provide new information on the coordinated interaction between mitochondria and chloroplasts.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Cell Respiration
  • Chloroplasts / genetics
  • Chloroplasts / metabolism
  • Gene Expression Regulation, Plant / genetics*
  • Gene Knockout Techniques
  • Light
  • Mitochondria / genetics
  • Mitochondria / metabolism
  • Mitochondrial Proteins / genetics
  • Mitochondrial Proteins / metabolism*
  • Mutagenesis, Insertional
  • NADH Dehydrogenase / genetics*
  • NADH Dehydrogenase / metabolism
  • Oryza / enzymology
  • Oryza / genetics*
  • Oryza / growth & development
  • Oryza / radiation effects
  • Oxidoreductases / genetics
  • Oxidoreductases / metabolism
  • Phenotype
  • Photosynthesis
  • Plant Components, Aerial / enzymology
  • Plant Components, Aerial / genetics
  • Plant Components, Aerial / growth & development
  • Plant Components, Aerial / radiation effects
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Plant Roots / enzymology
  • Plant Roots / genetics
  • Plant Roots / growth & development
  • Plant Roots / radiation effects
  • Protein Transport
  • RNA Editing*
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • RNA, Plant / genetics
  • RNA, Plant / metabolism
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism
  • Recombinant Fusion Proteins
  • Seedlings / enzymology
  • Seedlings / genetics
  • Seedlings / growth & development
  • Seedlings / radiation effects
  • Sequence Analysis, DNA

Substances

  • Mitochondrial Proteins
  • Plant Proteins
  • RNA, Messenger
  • RNA, Plant
  • RNA-Binding Proteins
  • Recombinant Fusion Proteins
  • Oxidoreductases
  • alternative oxidase
  • NADH Dehydrogenase