Interdomain allostery promotes assembly of the poly(A) mRNA complex with PABP and eIF4G

Mol Cell. 2012 Nov 9;48(3):375-86. doi: 10.1016/j.molcel.2012.09.001. Epub 2012 Oct 4.

Abstract

Many RNA-binding proteins contain multiple single-strand nucleic acid-binding domains and assemble into large multiprotein messenger ribonucleic acid protein (mRNP) complexes. The mechanisms underlying the self-assembly of these complexes are largely unknown. In eukaryotes, the association of the translation factors polyadenylate-binding protein-1 (PABP) and eIF4G is essential for high-level expression of polyadenylated mRNAs. Here, we report the crystal structure of the ternary complex poly(A)(11)·PABP(1-190)·eIF4G(178-203) at 2.0 Å resolution. Our NMR and crystallographic data show that eIF4G interacts with the RRM2 domain of PABP. Analysis of the interaction by small-angle X-ray scattering, isothermal titration calorimetry, and electromobility shift assays reveals that this interaction is allosterically regulated by poly(A) binding to PABP. Furthermore, we have confirmed the importance of poly(A) for the endogenous PABP and eIF4G interaction in immunoprecipitation experiments using HeLa cell extracts. Our findings reveal interdomain allostery as a mechanism for cooperative assembly of RNP complexes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Binding Sites / genetics
  • Calorimetry
  • Crystallography, X-Ray
  • Electrophoretic Mobility Shift Assay
  • Eukaryotic Initiation Factor-4G / chemistry
  • Eukaryotic Initiation Factor-4G / genetics
  • Eukaryotic Initiation Factor-4G / metabolism*
  • HeLa Cells
  • Humans
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Molecular Sequence Data
  • Multiprotein Complexes / chemistry
  • Multiprotein Complexes / metabolism
  • Nucleic Acid Conformation
  • Poly A / chemistry
  • Poly A / genetics
  • Poly A / metabolism*
  • Poly(A)-Binding Protein I / chemistry
  • Poly(A)-Binding Protein I / genetics
  • Poly(A)-Binding Protein I / metabolism*
  • Protein Binding
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • RNA, Messenger / chemistry
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism*
  • Ribonucleoproteins / chemistry
  • Ribonucleoproteins / metabolism
  • Scattering, Small Angle
  • Sequence Homology, Amino Acid
  • X-Ray Diffraction

Substances

  • Eukaryotic Initiation Factor-4G
  • Multiprotein Complexes
  • PABPN1 protein, human
  • Poly(A)-Binding Protein I
  • RNA, Messenger
  • Ribonucleoproteins
  • Poly A

Associated data

  • PDB/4F02
  • PDB/4F25
  • PDB/4F26