Lentiviral vector-based insertional mutagenesis identifies genes associated with liver cancer

Nat Methods. 2013 Feb;10(2):155-61. doi: 10.1038/nmeth.2331. Epub 2013 Jan 13.

Abstract

Transposons and γ-retroviruses have been efficiently used as insertional mutagens in different tissues to identify molecular culprits of cancer. However, these systems are characterized by recurring integrations that accumulate in tumor cells and that hamper the identification of early cancer-driving events among bystander and progression-related events. We developed an insertional mutagenesis platform based on lentiviral vectors (LVVs) by which we could efficiently induce hepatocellular carcinoma (HCC) in three different mouse models. By virtue of the LVV's replication-deficient nature and broad genome-wide integration pattern, LVV-based insertional mutagenesis allowed identification of four previously unknown liver cancer-associated genes from a limited number of integrations. We validated the oncogenic potential of all the identified genes in vivo, with different levels of penetrance. The newly identified genes are likely to play a role in human cancer because they are upregulated, amplified and/or deleted in human HCCs and can predict clinical outcomes of patients.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Carcinoma, Hepatocellular / genetics*
  • Cyclin-Dependent Kinase Inhibitor p16 / deficiency
  • Genetic Vectors
  • Humans
  • Lentivirus / genetics*
  • Liver Neoplasms / genetics*
  • Mice
  • Mutagenesis, Insertional*
  • Oncogenes*
  • PTEN Phosphohydrolase / deficiency
  • Prealbumin / genetics
  • Receptor, Interferon alpha-beta / deficiency

Substances

  • Cdkn2a protein, mouse
  • Cyclin-Dependent Kinase Inhibitor p16
  • Ifnar1 protein, mouse
  • Prealbumin
  • Receptor, Interferon alpha-beta
  • PTEN Phosphohydrolase
  • Pten protein, mouse

Associated data

  • GEO/GSE31409